Structure

Physi-Chem Properties

Molecular Weight:  448.21
Volume:  452.494
LogP:  1.415
LogD:  1.242
LogS:  -4.103
# Rotatable Bonds:  5
TPSA:  127.2
# H-Bond Aceptor:  8
# H-Bond Donor:  2
# Rings:  3
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.495
Synthetic Accessibility Score:  5.213
Fsp3:  0.667
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.948
MDCK Permeability:  2.7180385586689226e-05
Pgp-inhibitor:  0.998
Pgp-substrate:  0.256
Human Intestinal Absorption (HIA):  0.186
20% Bioavailability (F20%):  0.993
30% Bioavailability (F30%):  0.036

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.915
Plasma Protein Binding (PPB):  72.28495788574219%
Volume Distribution (VD):  0.664
Pgp-substrate:  31.95972442626953%

ADMET: Metabolism

CYP1A2-inhibitor:  0.005
CYP1A2-substrate:  0.184
CYP2C19-inhibitor:  0.052
CYP2C19-substrate:  0.331
CYP2C9-inhibitor:  0.051
CYP2C9-substrate:  0.092
CYP2D6-inhibitor:  0.005
CYP2D6-substrate:  0.062
CYP3A4-inhibitor:  0.806
CYP3A4-substrate:  0.476

ADMET: Excretion

Clearance (CL):  1.779
Half-life (T1/2):  0.441

ADMET: Toxicity

hERG Blockers:  0.012
Human Hepatotoxicity (H-HT):  0.185
Drug-inuced Liver Injury (DILI):  0.129
AMES Toxicity:  0.411
Rat Oral Acute Toxicity:  0.893
Maximum Recommended Daily Dose:  0.399
Skin Sensitization:  0.195
Carcinogencity:  0.396
Eye Corrosion:  0.122
Eye Irritation:  0.096
Respiratory Toxicity:  0.932

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  Natural Product: NPC198539

Natural Product ID:  NPC198539
Common Name*:   Orthosiphol Y
IUPAC Name:   [(4aR,4bS,5R,7R,8aR,9R,10aR)-3-acetyloxy-7-ethenyl-5,8a-dihydroxy-1,1,4a,7-tetramethyl-2,8-dioxo-4b,5,6,9,10,10a-hexahydrophenanthren-9-yl] acetate
Synonyms:   11-Debenzoyloxyorthosiphol D
Standard InCHIKey:  HPYXDZBUORPUPP-FBZJSPOMSA-N
Standard InCHI:  InChI=1S/C24H32O8/c1-8-22(6)10-14(27)18-23(7)11-15(31-12(2)25)19(28)21(4,5)16(23)9-17(32-13(3)26)24(18,30)20(22)29/h8,11,14,16-18,27,30H,1,9-10H2,2-7H3/t14-,16+,17-,18-,22+,23+,24+/m1/s1
SMILES:  C=C[C@@]1(C)C[C@H]([C@@H]2[C@@]3(C)C=C(C(=O)C(C)(C)[C@@H]3C[C@H]([C@]2(C1=O)O)OC(=O)C)OC(=O)C)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL523730
PubChem CID:   11144807
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO2257 Oceanapia phillipensis Species Phloeodictyidae Eukaryota n.a. n.a. n.a. PMID[10654417]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11374950]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11473439]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12141863]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. Indonesia n.a. PMID[12467611]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota aerial parts Bangdung, Indonesia 2000-Aug PMID[12608860]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. Taiwan n.a. PMID[15104497]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[15516765]
NPO21944 Laurencia mariannensis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. PMID[18076141]
NPO10996 Ferula assa-foetida Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[19691312]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[20973550]
NPO5877 Morus yunnanensis Species Moraceae Eukaryota n.a. n.a. n.a. PMID[22165973]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[23700450]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. leaf n.a. PMID[23849114]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[24310066]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. PMID[25433632]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. n.a. PMID[26473275]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. PMID[26860358]
NPO23000 Zephyranthes carinata Species Amaryllidaceae Eukaryota Whole Plants n.a. n.a. PMID[28898076]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota Seeds n.a. n.a. PMID[31713425]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. PMID[31861466]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Petiole n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO23226 Satureja montana Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Protoplast n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[FooDB]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. Database[MetaboLights]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO23226 Satureja montana Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22071 Gentiana olivieri Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22462 Chlorophytum malayense Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21881 Stephania succifera Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2499 Celmisia petriei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10353 Rauvolfia tetraphylla Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1638 Ulmus laciniata Species Ulmaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO592 Chroogomphus rutilus Species Gomphidiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23226 Satureja montana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23101 Ircinia aruensis Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22137 Vernonia serratuloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14664 Stevia salicifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10073 Clusia torresii Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21680 Saussurea triangulata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21545 Maytenus guianensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20100 Ephedra lomatolepis Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22071 Gentiana olivieri Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22518 Gnetum cleistostachyum Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11235 Asplenium nidus Species Aspleniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22773 Teucrium alyssifolium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22952 Senecio grandiflorus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5890 Astragalus inopinatus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10996 Ferula assa-foetida Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2257 Oceanapia phillipensis Species Phloeodictyidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22717 Pinus thunbergii Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20726 Ophioplocus japonicus Species Ophiolepididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20964 Picradeniopsis oppositifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23000 Zephyranthes carinata Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21944 Laurencia mariannensis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23062 Melibe leonina Species Dendronotidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5877 Morus yunnanensis Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22015 Clausena indica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7320 Nicotiana gossei Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16275 Pterocaulon rugosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22395 Ardisia macrocarpa Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21384 Tetraria capillaris Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21745 Phleum africanum Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14797 Orthosiphon aristatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22462 Chlorophytum malayense Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21881 Stephania succifera Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22197 Eriogaster lanestris Species Lasiocampidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23183 Pinus halepensis Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14529 Asterias rubens Species Asteriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1408 Cirsium helenioides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22911 Enterococcus faecalis Species Enterococcaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14887 Handroanthus guayacan Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21140 Igernella notabilis Species Dictyodendrillidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT20763 CELL-LINE J774.1 Mus musculus IC50 = 37900.0 nM PMID[521572]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC198539 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9528 High Similarity NPC90769
0.9065 High Similarity NPC27814
0.9018 High Similarity NPC470777
0.8919 High Similarity NPC173686
0.8919 High Similarity NPC16081
0.886 High Similarity NPC275675
0.8829 High Similarity NPC45218
0.8829 High Similarity NPC268238
0.8829 High Similarity NPC143268
0.8829 High Similarity NPC323821
0.8761 High Similarity NPC17772
0.875 High Similarity NPC251236
0.875 High Similarity NPC40632
0.875 High Similarity NPC96312
0.875 High Similarity NPC328374
0.8739 High Similarity NPC208998
0.8739 High Similarity NPC7921
0.8729 High Similarity NPC295220
0.8729 High Similarity NPC475636
0.8707 High Similarity NPC227397
0.8707 High Similarity NPC265557
0.8707 High Similarity NPC91693
0.8707 High Similarity NPC18945
0.8707 High Similarity NPC105926
0.8684 High Similarity NPC469488
0.8684 High Similarity NPC279143
0.8684 High Similarity NPC127530
0.8673 High Similarity NPC474654
0.8673 High Similarity NPC287343
0.8673 High Similarity NPC97908
0.8673 High Similarity NPC470854
0.8673 High Similarity NPC122033
0.8661 High Similarity NPC473798
0.8655 High Similarity NPC54614
0.8655 High Similarity NPC309096
0.8636 High Similarity NPC100908
0.8632 High Similarity NPC24651
0.8632 High Similarity NPC476729
0.8621 High Similarity NPC312833
0.8596 High Similarity NPC297179
0.8596 High Similarity NPC251310
0.8584 High Similarity NPC207217
0.8571 High Similarity NPC49451
0.8559 High Similarity NPC171888
0.8559 High Similarity NPC146945
0.8532 High Similarity NPC202524
0.8519 High Similarity NPC65523
0.8482 Intermediate Similarity NPC474516
0.8475 Intermediate Similarity NPC473255
0.8468 Intermediate Similarity NPC474567
0.8455 Intermediate Similarity NPC293850
0.8455 Intermediate Similarity NPC289702
0.8455 Intermediate Similarity NPC208461
0.8448 Intermediate Similarity NPC478051
0.8435 Intermediate Similarity NPC188667
0.8435 Intermediate Similarity NPC21326
0.8435 Intermediate Similarity NPC204552
0.8421 Intermediate Similarity NPC134869
0.8421 Intermediate Similarity NPC152199
0.8421 Intermediate Similarity NPC235539
0.8403 Intermediate Similarity NPC87662
0.8403 Intermediate Similarity NPC477745
0.839 Intermediate Similarity NPC67251
0.8378 Intermediate Similarity NPC474242
0.8376 Intermediate Similarity NPC477046
0.8376 Intermediate Similarity NPC102822
0.8376 Intermediate Similarity NPC470779
0.8364 Intermediate Similarity NPC3316
0.8364 Intermediate Similarity NPC144854
0.8362 Intermediate Similarity NPC473920
0.8361 Intermediate Similarity NPC100390
0.8361 Intermediate Similarity NPC254614
0.8348 Intermediate Similarity NPC27999
0.8348 Intermediate Similarity NPC477116
0.8333 Intermediate Similarity NPC474906
0.8333 Intermediate Similarity NPC470882
0.8333 Intermediate Similarity NPC476008
0.8333 Intermediate Similarity NPC247069
0.8333 Intermediate Similarity NPC18547
0.8319 Intermediate Similarity NPC470922
0.8291 Intermediate Similarity NPC112038
0.8288 Intermediate Similarity NPC154608
0.8288 Intermediate Similarity NPC192813
0.8288 Intermediate Similarity NPC94942
0.8288 Intermediate Similarity NPC277017
0.8276 Intermediate Similarity NPC470776
0.8261 Intermediate Similarity NPC474734
0.8257 Intermediate Similarity NPC264048
0.825 Intermediate Similarity NPC225049
0.824 Intermediate Similarity NPC190065
0.824 Intermediate Similarity NPC471089
0.824 Intermediate Similarity NPC141215
0.8214 Intermediate Similarity NPC87335
0.8214 Intermediate Similarity NPC310546
0.8211 Intermediate Similarity NPC102316
0.8205 Intermediate Similarity NPC268958
0.8205 Intermediate Similarity NPC473636
0.8205 Intermediate Similarity NPC77689
0.8198 Intermediate Similarity NPC166993
0.819 Intermediate Similarity NPC470775
0.819 Intermediate Similarity NPC134430
0.819 Intermediate Similarity NPC176513
0.819 Intermediate Similarity NPC473590
0.8182 Intermediate Similarity NPC473265
0.8182 Intermediate Similarity NPC475036
0.8175 Intermediate Similarity NPC140045
0.8175 Intermediate Similarity NPC295885
0.8175 Intermediate Similarity NPC596
0.816 Intermediate Similarity NPC262813
0.8158 Intermediate Similarity NPC11252
0.8158 Intermediate Similarity NPC289312
0.8158 Intermediate Similarity NPC472002
0.8158 Intermediate Similarity NPC234042
0.8158 Intermediate Similarity NPC152117
0.8158 Intermediate Similarity NPC269530
0.8151 Intermediate Similarity NPC65858
0.8151 Intermediate Similarity NPC471965
0.8142 Intermediate Similarity NPC5284
0.8142 Intermediate Similarity NPC239097
0.8136 Intermediate Similarity NPC107338
0.8136 Intermediate Similarity NPC109607
0.8125 Intermediate Similarity NPC273155
0.812 Intermediate Similarity NPC176005
0.8113 Intermediate Similarity NPC477438
0.8113 Intermediate Similarity NPC477437
0.8108 Intermediate Similarity NPC181357
0.8108 Intermediate Similarity NPC200957
0.8108 Intermediate Similarity NPC102352
0.8108 Intermediate Similarity NPC138908
0.8103 Intermediate Similarity NPC190185
0.8103 Intermediate Similarity NPC179626
0.8103 Intermediate Similarity NPC213084
0.8099 Intermediate Similarity NPC473635
0.8099 Intermediate Similarity NPC293112
0.8095 Intermediate Similarity NPC251998
0.8087 Intermediate Similarity NPC477266
0.8087 Intermediate Similarity NPC250109
0.8087 Intermediate Similarity NPC94509
0.8087 Intermediate Similarity NPC255017
0.8087 Intermediate Similarity NPC320118
0.8083 Intermediate Similarity NPC43252
0.8083 Intermediate Similarity NPC262199
0.8083 Intermediate Similarity NPC267822
0.8083 Intermediate Similarity NPC471961
0.8083 Intermediate Similarity NPC471964
0.8083 Intermediate Similarity NPC135038
0.8083 Intermediate Similarity NPC202666
0.8083 Intermediate Similarity NPC14617
0.8083 Intermediate Similarity NPC11895
0.807 Intermediate Similarity NPC34315
0.807 Intermediate Similarity NPC157476
0.807 Intermediate Similarity NPC201992
0.807 Intermediate Similarity NPC474229
0.8065 Intermediate Similarity NPC6274
0.8065 Intermediate Similarity NPC254146
0.8065 Intermediate Similarity NPC33378
0.8065 Intermediate Similarity NPC476193
0.8053 Intermediate Similarity NPC470257
0.8053 Intermediate Similarity NPC41405
0.8051 Intermediate Similarity NPC473203
0.8051 Intermediate Similarity NPC211093
0.8051 Intermediate Similarity NPC476529
0.8051 Intermediate Similarity NPC473839
0.8051 Intermediate Similarity NPC475775
0.8049 Intermediate Similarity NPC470880
0.8049 Intermediate Similarity NPC264192
0.8049 Intermediate Similarity NPC231529
0.8036 Intermediate Similarity NPC176949
0.8036 Intermediate Similarity NPC201908
0.8036 Intermediate Similarity NPC44063
0.8034 Intermediate Similarity NPC146432
0.8034 Intermediate Similarity NPC309433
0.8034 Intermediate Similarity NPC471854
0.8034 Intermediate Similarity NPC475809
0.8034 Intermediate Similarity NPC470778
0.8033 Intermediate Similarity NPC473253
0.8019 Intermediate Similarity NPC477439
0.8018 Intermediate Similarity NPC284865
0.8018 Intermediate Similarity NPC301787
0.8017 Intermediate Similarity NPC471963
0.8017 Intermediate Similarity NPC471962
0.8017 Intermediate Similarity NPC299849
0.8017 Intermediate Similarity NPC117712
0.8017 Intermediate Similarity NPC81736
0.8017 Intermediate Similarity NPC169818
0.8017 Intermediate Similarity NPC30188
0.8017 Intermediate Similarity NPC243354
0.8017 Intermediate Similarity NPC247315
0.8017 Intermediate Similarity NPC177820
0.8017 Intermediate Similarity NPC172154
0.8 Intermediate Similarity NPC170538
0.8 Intermediate Similarity NPC280782
0.8 Intermediate Similarity NPC168879
0.8 Intermediate Similarity NPC317687
0.8 Intermediate Similarity NPC205534
0.8 Intermediate Similarity NPC222688
0.8 Intermediate Similarity NPC193948
0.7983 Intermediate Similarity NPC476961
0.7982 Intermediate Similarity NPC472972
0.7982 Intermediate Similarity NPC477655

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC198539 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8455 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.8448 Intermediate Similarity NPD6319 Approved
0.8319 Intermediate Similarity NPD8297 Approved
0.823 Intermediate Similarity NPD6649 Approved
0.823 Intermediate Similarity NPD6650 Approved
0.8125 Intermediate Similarity NPD6881 Approved
0.8125 Intermediate Similarity NPD6899 Approved
0.8083 Intermediate Similarity NPD8328 Phase 3
0.8053 Intermediate Similarity NPD6372 Approved
0.8053 Intermediate Similarity NPD6373 Approved
0.8036 Intermediate Similarity NPD5697 Approved
0.8017 Intermediate Similarity NPD7492 Approved
0.8 Intermediate Similarity NPD6882 Approved
0.7983 Intermediate Similarity NPD6054 Approved
0.7982 Intermediate Similarity NPD6883 Approved
0.7982 Intermediate Similarity NPD7290 Approved
0.7982 Intermediate Similarity NPD7102 Approved
0.7951 Intermediate Similarity NPD6616 Approved
0.7946 Intermediate Similarity NPD7128 Approved
0.7946 Intermediate Similarity NPD6675 Approved
0.7946 Intermediate Similarity NPD5739 Approved
0.7946 Intermediate Similarity NPD6402 Approved
0.7931 Intermediate Similarity NPD4632 Approved
0.7913 Intermediate Similarity NPD8130 Phase 1
0.7913 Intermediate Similarity NPD6617 Approved
0.7913 Intermediate Similarity NPD6847 Approved
0.7913 Intermediate Similarity NPD6869 Approved
0.7895 Intermediate Similarity NPD6012 Approved
0.7895 Intermediate Similarity NPD6014 Approved
0.7895 Intermediate Similarity NPD6013 Approved
0.7886 Intermediate Similarity NPD7078 Approved
0.7851 Intermediate Similarity NPD6370 Approved
0.7826 Intermediate Similarity NPD4634 Approved
0.7823 Intermediate Similarity NPD7736 Approved
0.7807 Intermediate Similarity NPD7320 Approved
0.7807 Intermediate Similarity NPD6011 Approved
0.7769 Intermediate Similarity NPD6015 Approved
0.7769 Intermediate Similarity NPD6921 Approved
0.7769 Intermediate Similarity NPD6016 Approved
0.7731 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7731 Intermediate Similarity NPD6009 Approved
0.7719 Intermediate Similarity NPD5701 Approved
0.7705 Intermediate Similarity NPD5988 Approved
0.7686 Intermediate Similarity NPD6059 Approved
0.7642 Intermediate Similarity NPD7604 Phase 2
0.7623 Intermediate Similarity NPD5983 Phase 2
0.76 Intermediate Similarity NPD8293 Discontinued
0.7583 Intermediate Similarity NPD7115 Discovery
0.752 Intermediate Similarity NPD6336 Discontinued
0.75 Intermediate Similarity NPD5286 Approved
0.75 Intermediate Similarity NPD5285 Approved
0.75 Intermediate Similarity NPD4696 Approved
0.7459 Intermediate Similarity NPD7100 Approved
0.7459 Intermediate Similarity NPD7101 Approved
0.7458 Intermediate Similarity NPD6401 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7377 Intermediate Similarity NPD6335 Approved
0.7373 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD4633 Approved
0.7368 Intermediate Similarity NPD5211 Phase 2
0.7368 Intermediate Similarity NPD5225 Approved
0.7368 Intermediate Similarity NPD5226 Approved
0.7368 Intermediate Similarity NPD5224 Approved
0.7355 Intermediate Similarity NPD6274 Approved
0.7321 Intermediate Similarity NPD7902 Approved
0.7321 Intermediate Similarity NPD4755 Approved
0.7321 Intermediate Similarity NPD6083 Phase 2
0.7321 Intermediate Similarity NPD6084 Phase 2
0.7304 Intermediate Similarity NPD5175 Approved
0.7304 Intermediate Similarity NPD5174 Approved
0.7295 Intermediate Similarity NPD6317 Approved
0.7281 Intermediate Similarity NPD5223 Approved
0.7241 Intermediate Similarity NPD5141 Approved
0.7236 Intermediate Similarity NPD6313 Approved
0.7236 Intermediate Similarity NPD6314 Approved
0.7232 Intermediate Similarity NPD5221 Approved
0.7232 Intermediate Similarity NPD5222 Approved
0.7232 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.7213 Intermediate Similarity NPD6868 Approved
0.7209 Intermediate Similarity NPD7319 Approved
0.7207 Intermediate Similarity NPD7748 Approved
0.7203 Intermediate Similarity NPD4730 Approved
0.7203 Intermediate Similarity NPD4729 Approved
0.7193 Intermediate Similarity NPD4700 Approved
0.7182 Intermediate Similarity NPD6079 Approved
0.7182 Intermediate Similarity NPD7515 Phase 2
0.7168 Intermediate Similarity NPD5173 Approved
0.7132 Intermediate Similarity NPD6033 Approved
0.713 Intermediate Similarity NPD3573 Approved
0.7119 Intermediate Similarity NPD5954 Clinical (unspecified phase)
0.7105 Intermediate Similarity NPD4225 Approved
0.7105 Intermediate Similarity NPD5696 Approved
0.7083 Intermediate Similarity NPD5250 Approved
0.7083 Intermediate Similarity NPD5249 Phase 3
0.7083 Intermediate Similarity NPD5247 Approved
0.7083 Intermediate Similarity NPD5248 Approved
0.7083 Intermediate Similarity NPD5251 Approved
0.708 Intermediate Similarity NPD4697 Phase 3
0.7063 Intermediate Similarity NPD6291 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD6908 Approved
0.7063 Intermediate Similarity NPD6909 Approved
0.7059 Intermediate Similarity NPD6686 Approved
0.7054 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7054 Intermediate Similarity NPD7900 Approved
0.7034 Intermediate Similarity NPD4768 Approved
0.7034 Intermediate Similarity NPD6008 Approved
0.7034 Intermediate Similarity NPD4767 Approved
0.7027 Intermediate Similarity NPD6411 Approved
0.7 Intermediate Similarity NPD5328 Approved
0.6991 Remote Similarity NPD5695 Phase 3
0.6977 Remote Similarity NPD7507 Approved
0.6975 Remote Similarity NPD6412 Phase 2
0.6964 Remote Similarity NPD6399 Phase 3
0.6917 Remote Similarity NPD5128 Approved
0.6909 Remote Similarity NPD5737 Approved
0.6909 Remote Similarity NPD6672 Approved
0.6903 Remote Similarity NPD5282 Discontinued
0.6885 Remote Similarity NPD5217 Approved
0.6885 Remote Similarity NPD5216 Approved
0.6885 Remote Similarity NPD5215 Approved
0.6881 Remote Similarity NPD3618 Phase 1
0.6881 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6864 Remote Similarity NPD4754 Approved
0.6847 Remote Similarity NPD6101 Approved
0.6847 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6842 Remote Similarity NPD4629 Approved
0.6842 Remote Similarity NPD5210 Approved
0.6814 Remote Similarity NPD5778 Approved
0.6814 Remote Similarity NPD5779 Approved
0.681 Remote Similarity NPD7638 Approved
0.6803 Remote Similarity NPD5135 Approved
0.6803 Remote Similarity NPD5169 Approved
0.6803 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6797 Remote Similarity NPD7503 Approved
0.6752 Remote Similarity NPD7640 Approved
0.6752 Remote Similarity NPD7639 Approved
0.6748 Remote Similarity NPD5127 Approved
0.6716 Remote Similarity NPD7260 Phase 2
0.6696 Remote Similarity NPD6673 Approved
0.6696 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6696 Remote Similarity NPD4753 Phase 2
0.6696 Remote Similarity NPD6080 Approved
0.6696 Remote Similarity NPD6904 Approved
0.6695 Remote Similarity NPD5344 Discontinued
0.6667 Remote Similarity NPD4202 Approved
0.6667 Remote Similarity NPD8513 Phase 3
0.6667 Remote Similarity NPD6334 Approved
0.6667 Remote Similarity NPD6333 Approved
0.6667 Remote Similarity NPD8516 Approved
0.6667 Remote Similarity NPD8517 Approved
0.6667 Remote Similarity NPD8515 Approved
0.6642 Remote Similarity NPD5956 Approved
0.6641 Remote Similarity NPD7516 Approved
0.6641 Remote Similarity NPD4522 Approved
0.6639 Remote Similarity NPD5168 Approved
0.6636 Remote Similarity NPD4695 Discontinued
0.6587 Remote Similarity NPD5167 Approved
0.6579 Remote Similarity NPD7983 Approved
0.6577 Remote Similarity NPD6409 Approved
0.6577 Remote Similarity NPD7146 Approved
0.6577 Remote Similarity NPD7521 Approved
0.6577 Remote Similarity NPD5330 Approved
0.6577 Remote Similarity NPD7334 Approved
0.6577 Remote Similarity NPD6684 Approved
0.6562 Remote Similarity NPD7328 Approved
0.6562 Remote Similarity NPD7327 Approved
0.656 Remote Similarity NPD6053 Discontinued
0.6557 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6555 Remote Similarity NPD1700 Approved
0.6552 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6552 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6532 Remote Similarity NPD6371 Approved
0.6486 Remote Similarity NPD1694 Approved
0.646 Remote Similarity NPD6903 Approved
0.646 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6455 Remote Similarity NPD6110 Phase 1
0.6435 Remote Similarity NPD8035 Phase 2
0.6435 Remote Similarity NPD5694 Approved
0.6435 Remote Similarity NPD5284 Approved
0.6435 Remote Similarity NPD5693 Phase 1
0.6435 Remote Similarity NPD8034 Phase 2
0.6435 Remote Similarity NPD5281 Approved
0.6435 Remote Similarity NPD6050 Approved
0.6429 Remote Similarity NPD6098 Approved
0.6423 Remote Similarity NPD6845 Suspended
0.6418 Remote Similarity NPD8074 Phase 3
0.6412 Remote Similarity NPD8379 Approved
0.6412 Remote Similarity NPD8296 Approved
0.6412 Remote Similarity NPD8335 Approved
0.6412 Remote Similarity NPD8380 Approved
0.6412 Remote Similarity NPD8378 Approved
0.6396 Remote Similarity NPD3665 Phase 1
0.6396 Remote Similarity NPD3133 Approved
0.6396 Remote Similarity NPD4786 Approved
0.6396 Remote Similarity NPD3666 Approved
0.6378 Remote Similarity NPD8133 Approved
0.6364 Remote Similarity NPD3667 Approved
0.6364 Remote Similarity NPD7632 Discontinued
0.6364 Remote Similarity NPD8080 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data