Structure

Physi-Chem Properties

Molecular Weight:  494.27
Volume:  524.86
LogP:  5.772
LogD:  4.105
LogS:  -3.136
# Rotatable Bonds:  5
TPSA:  99.38
# H-Bond Aceptor:  6
# H-Bond Donor:  4
# Rings:  4
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.335
Synthetic Accessibility Score:  4.364
Fsp3:  0.467
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.048
MDCK Permeability:  1.1541114872670732e-05
Pgp-inhibitor:  0.985
Pgp-substrate:  0.935
Human Intestinal Absorption (HIA):  0.06
20% Bioavailability (F20%):  0.992
30% Bioavailability (F30%):  0.421

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.05
Plasma Protein Binding (PPB):  97.34381103515625%
Volume Distribution (VD):  0.729
Pgp-substrate:  4.295896530151367%

ADMET: Metabolism

CYP1A2-inhibitor:  0.363
CYP1A2-substrate:  0.452
CYP2C19-inhibitor:  0.196
CYP2C19-substrate:  0.101
CYP2C9-inhibitor:  0.504
CYP2C9-substrate:  0.902
CYP2D6-inhibitor:  0.324
CYP2D6-substrate:  0.263
CYP3A4-inhibitor:  0.228
CYP3A4-substrate:  0.227

ADMET: Excretion

Clearance (CL):  9.796
Half-life (T1/2):  0.259

ADMET: Toxicity

hERG Blockers:  0.603
Human Hepatotoxicity (H-HT):  0.596
Drug-inuced Liver Injury (DILI):  0.279
AMES Toxicity:  0.011
Rat Oral Acute Toxicity:  0.273
Maximum Recommended Daily Dose:  0.947
Skin Sensitization:  0.923
Carcinogencity:  0.025
Eye Corrosion:  0.003
Eye Irritation:  0.129
Respiratory Toxicity:  0.768

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC158784

Natural Product ID:  NPC158784
Common Name*:   Schweinfurthin E
IUPAC Name:   (2S,3R,4aR,9aR)-7-[(E)-2-[3,5-dihydroxy-4-(3-methylbut-2-enyl)phenyl]ethenyl]-5-methoxy-1,1,4a-trimethyl-3,4,9,9a-tetrahydro-2H-xanthene-2,3-diol
Synonyms:   Schweinfurthin E
Standard InCHIKey:  IYHZCJNEODJYKB-DMCZWXATSA-N
Standard InCHI:  InChI=1S/C30H38O6/c1-17(2)7-10-21-22(31)12-19(13-23(21)32)9-8-18-11-20-15-26-29(3,4)28(34)24(33)16-30(26,5)36-27(20)25(14-18)35-6/h7-9,11-14,24,26,28,31-34H,10,15-16H2,1-6H3/b9-8+/t24-,26-,28-,30-/m1/s1
SMILES:  CC(=CCc1c(cc(/C=C/c2cc3C[C@@H]4C(C)(C)[C@@H]([C@@H](C[C@@]4(C)Oc3c(c2)OC)O)O)cc1O)O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL220472
PubChem CID:   16116472
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000123] Benzopyrans
        • [CHEMONTID:0003410] 1-benzopyrans
          • [CHEMONTID:0002817] Dibenzopyrans
            • [CHEMONTID:0000200] Xanthenes

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO27255 Macaranga alnifolia Species Euphorbiaceae Eukaryota n.a. leaf n.a. DOI[10.1016/0031-9422(92)80315-6]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[11421757]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[15974621]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves Krachong waterfall area, Trang Province, Thailand 2001-APR PMID[15974621]
NPO27255 Macaranga alnifolia Species Euphorbiaceae Eukaryota n.a. Madagascar rainforest n.a. PMID[17326683]
NPO27255 Macaranga alnifolia Species Euphorbiaceae Eukaryota n.a. fruit n.a. PMID[17326683]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves n.a. n.a. PMID[18844422]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[18844422]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[28972755]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27255 Macaranga alnifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 = 3715.35 nM PMID[473001]
NPT571 Cell Line A2780cisR Homo sapiens IC50 = 260.0 nM PMID[473001]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 = 2200.0 nM PMID[473001]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 = 2200.0 nM PMID[473001]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 = 2200.0 nM PMID[473001]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 = 2200.0 nM PMID[473001]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 < 10.0 nM PMID[473001]
NPT112 Cell Line MOLT-4 Homo sapiens TGI < 10.0 nM PMID[473001]
NPT399 Cell Line SF-295 Homo sapiens GI50 < 10.0 nM PMID[473001]
NPT399 Cell Line SF-295 Homo sapiens TGI < 10.0 nM PMID[473001]
NPT376 Cell Line A498 Homo sapiens GI50 < 10.0 nM PMID[473001]
NPT376 Cell Line A498 Homo sapiens TGI < 10.0 nM PMID[473001]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 < 10.0 nM PMID[473001]
NPT308 Cell Line CAKI-1 Homo sapiens TGI < 10.0 nM PMID[473001]
NPT394 Cell Line EKVX Homo sapiens GI50 = 2137.96 nM PMID[473001]
NPT81 Cell Line A549 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT111 Cell Line K562 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT379 Cell Line HOP-62 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT404 Cell Line CCRF-CEM Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT404 Cell Line CCRF-CEM Homo sapiens TGI = 10000.0 nM PMID[473001]
NPT111 Cell Line K562 Homo sapiens TGI = 691.83 nM PMID[473001]
NPT112 Cell Line MOLT-4 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT389 Cell Line RPMI-8226 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT389 Cell Line RPMI-8226 Homo sapiens TGI = 52.48 nM PMID[473001]
NPT81 Cell Line A549 Homo sapiens TGI = 12589.25 nM PMID[473001]
NPT81 Cell Line A549 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT394 Cell Line EKVX Homo sapiens TGI = 28183.83 nM PMID[473001]
NPT394 Cell Line EKVX Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT391 Cell Line HCC 2998 Homo sapiens LC50 = 6456.54 nM PMID[473001]
NPT379 Cell Line HOP-62 Homo sapiens TGI = 75.86 nM PMID[473001]
NPT379 Cell Line HOP-62 Homo sapiens LC50 = 7762.47 nM PMID[473001]
NPT372 Cell Line HOP-92 Homo sapiens GI50 = 794.33 nM PMID[473001]
NPT372 Cell Line HOP-92 Homo sapiens TGI = 5128.61 nM PMID[473001]
NPT372 Cell Line HOP-92 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 = 239.88 nM PMID[473001]
NPT370 Cell Line NCI-H23 Homo sapiens TGI = 2344.23 nM PMID[473001]
NPT370 Cell Line NCI-H23 Homo sapiens LC50 = 13803.84 nM PMID[473001]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 = 288.4 nM PMID[473001]
NPT388 Cell Line NCI-H322M Homo sapiens TGI = 2238.72 nM PMID[473001]
NPT388 Cell Line NCI-H322M Homo sapiens LC50 = 13803.84 nM PMID[473001]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 151.36 nM PMID[473001]
NPT397 Cell Line NCI-H460 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT397 Cell Line NCI-H460 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 = 1995.26 nM PMID[473001]
NPT455 Cell Line NCI-H522 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT455 Cell Line NCI-H522 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 = 1023.29 nM PMID[473001]
NPT391 Cell Line HCC 2998 Homo sapiens TGI = 2570.4 nM PMID[473001]
NPT393 Cell Line HCT-116 Homo sapiens GI50 = 20.89 nM PMID[473001]
NPT393 Cell Line HCT-116 Homo sapiens TGI = 870.96 nM PMID[473001]
NPT393 Cell Line HCT-116 Homo sapiens LC50 = 6918.31 nM PMID[473001]
NPT148 Cell Line HCT-15 Homo sapiens GI50 = 602.56 nM PMID[473001]
NPT148 Cell Line HCT-15 Homo sapiens TGI = 3630.78 nM PMID[473001]
NPT148 Cell Line HCT-15 Homo sapiens LC50 = 26915.35 nM PMID[473001]
NPT139 Cell Line HT-29 Homo sapiens GI50 = 1288.25 nM PMID[473001]
NPT139 Cell Line HT-29 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT386 Cell Line KM12 Homo sapiens GI50 = 457.09 nM PMID[473001]
NPT386 Cell Line KM12 Homo sapiens TGI = 2238.72 nM PMID[473001]
NPT386 Cell Line KM12 Homo sapiens LC50 = 9549.93 nM PMID[473001]
NPT323 Cell Line SW-620 Homo sapiens GI50 = 109.65 nM PMID[473001]
NPT323 Cell Line SW-620 Homo sapiens TGI = 2041.74 nM PMID[473001]
NPT323 Cell Line SW-620 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT395 Cell Line SF-268 Homo sapiens GI50 = 2630.27 nM PMID[473001]
NPT395 Cell Line SF-268 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT395 Cell Line SF-268 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT399 Cell Line SF-295 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT399 Cell Line SF-295 Homo sapiens LC50 < 10.0 nM PMID[473001]
NPT374 Cell Line SF-539 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT374 Cell Line SF-539 Homo sapiens TGI = 158.49 nM PMID[473001]
NPT383 Cell Line SNB-19 Homo sapiens GI50 = 10964.78 nM PMID[473001]
NPT383 Cell Line SNB-19 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT383 Cell Line SNB-19 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT392 Cell Line SNB-75 Homo sapiens GI50 = 1737.8 nM PMID[473001]
NPT392 Cell Line SNB-75 Homo sapiens TGI = 19952.62 nM PMID[473001]
NPT392 Cell Line SNB-75 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT380 Cell Line U-251 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT380 Cell Line U-251 Homo sapiens TGI = 3981.07 nM PMID[473001]
NPT380 Cell Line U-251 Homo sapiens LC50 = 32359.37 nM PMID[473001]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 = 645.65 nM PMID[473001]
NPT390 Cell Line LOX IMVI Homo sapiens TGI = 2344.23 nM PMID[473001]
NPT390 Cell Line LOX IMVI Homo sapiens LC50 = 6165.95 nM PMID[473001]
NPT387 Cell Line M14 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT387 Cell Line M14 Homo sapiens TGI = 288.4 nM PMID[473001]
NPT387 Cell Line M14 Homo sapiens LC50 = 4265.8 nM PMID[473001]
NPT147 Cell Line SK-MEL-2 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT147 Cell Line SK-MEL-2 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 = 371.54 nM PMID[473001]
NPT170 Cell Line SK-MEL-28 Homo sapiens TGI = 5248.07 nM PMID[473001]
NPT170 Cell Line SK-MEL-28 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 = 660.69 nM PMID[473001]
NPT373 Cell Line SK-MEL-5 Homo sapiens TGI = 2238.72 nM PMID[473001]
NPT373 Cell Line SK-MEL-5 Homo sapiens LC50 = 5623.41 nM PMID[473001]
NPT403 Cell Line UACC-257 Homo sapiens GI50 = 165.96 nM PMID[473001]
NPT403 Cell Line UACC-257 Homo sapiens TGI = 3630.78 nM PMID[473001]
NPT403 Cell Line UACC-257 Homo sapiens LC50 = 37153.52 nM PMID[473001]
NPT398 Cell Line UACC-62 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT398 Cell Line UACC-62 Homo sapiens TGI = 371.54 nM PMID[473001]
NPT398 Cell Line UACC-62 Homo sapiens LC50 = 4073.8 nM PMID[473001]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 = 6165.95 nM PMID[473001]
NPT377 Cell Line OVCAR-3 Homo sapiens TGI = 8317.64 nM PMID[473001]
NPT377 Cell Line OVCAR-3 Homo sapiens LC50 = 23988.33 nM PMID[473001]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 = 575.44 nM PMID[473001]
NPT456 Cell Line OVCAR-4 Homo sapiens TGI = 9332.54 nM PMID[473001]
NPT456 Cell Line OVCAR-4 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 = 2511.89 nM PMID[473001]
NPT381 Cell Line OVCAR-8 Homo sapiens TGI = 6760.83 nM PMID[473001]
NPT381 Cell Line OVCAR-8 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 = 2754.23 nM PMID[473001]
NPT146 Cell Line SK-OV-3 Homo sapiens TGI = 10964.78 nM PMID[473001]
NPT146 Cell Line SK-OV-3 Homo sapiens LC50 = 93325.43 nM PMID[473001]
NPT401 Cell Line 786-0 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT401 Cell Line 786-0 Homo sapiens TGI = 1071.52 nM PMID[473001]
NPT401 Cell Line 786-0 Homo sapiens LC50 = 9772.37 nM PMID[473001]
NPT376 Cell Line A498 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT376 Cell Line A498 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT369 Cell Line ACHN Homo sapiens GI50 = 371.54 nM PMID[473001]
NPT369 Cell Line ACHN Homo sapiens TGI = 3019.95 nM PMID[473001]
NPT369 Cell Line ACHN Homo sapiens LC50 = 13182.57 nM PMID[473001]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 > 10.0 nM PMID[473001]
NPT308 Cell Line CAKI-1 Homo sapiens LC50 = 549.54 nM PMID[473001]
NPT368 Cell Line SN12C Homo sapiens GI50 = 2089.3 nM PMID[473001]
NPT368 Cell Line SN12C Homo sapiens TGI = 7585.78 nM PMID[473001]
NPT368 Cell Line SN12C Homo sapiens LC50 = 34673.69 nM PMID[473001]
NPT384 Cell Line TK-10 Homo sapiens TGI = 2630.27 nM PMID[473001]
NPT384 Cell Line TK-10 Homo sapiens LC50 = 18620.87 nM PMID[473001]
NPT371 Cell Line UO-31 Homo sapiens GI50 = 104.71 nM PMID[473001]
NPT371 Cell Line UO-31 Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT371 Cell Line UO-31 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT306 Cell Line PC-3 Homo sapiens GI50 = 138.04 nM PMID[473001]
NPT306 Cell Line PC-3 Homo sapiens TGI = 9549.93 nM PMID[473001]
NPT306 Cell Line PC-3 Homo sapiens LC50 = 47863.01 nM PMID[473001]
NPT90 Cell Line DU-145 Homo sapiens GI50 = 467.74 nM PMID[473001]
NPT90 Cell Line DU-145 Homo sapiens TGI = 14125.38 nM PMID[473001]
NPT90 Cell Line DU-145 Homo sapiens LC50 = 72443.6 nM PMID[473001]
NPT83 Cell Line MCF7 Homo sapiens GI50 = 61.66 nM PMID[473001]
NPT83 Cell Line MCF7 Homo sapiens TGI = 26915.35 nM PMID[473001]
NPT83 Cell Line MCF7 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 = 2238.72 nM PMID[473001]
NPT378 Cell Line NCI/ADR-RES Homo sapiens TGI = 6606.93 nM PMID[473001]
NPT378 Cell Line NCI/ADR-RES Homo sapiens LC50 = 50118.72 nM PMID[473001]
NPT82 Cell Line MDA-MB-231 Homo sapiens TGI = 3467.37 nM PMID[473001]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 = 851.14 nM PMID[473001]
NPT82 Cell Line MDA-MB-231 Homo sapiens LC50 = 26302.68 nM PMID[473001]
NPT457 Cell Line BT-549 Homo sapiens GI50 = 1513.56 nM PMID[473001]
NPT457 Cell Line BT-549 Homo sapiens TGI = 13182.57 nM PMID[473001]
NPT457 Cell Line BT-549 Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT396 Cell Line T47D Homo sapiens GI50 = 3235.94 nM PMID[473001]
NPT396 Cell Line T47D Homo sapiens TGI > 100000.0 nM PMID[473001]
NPT396 Cell Line T47D Homo sapiens LC50 > 100000.0 nM PMID[473001]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 = 123.03 nM PMID[473001]
NPT400 Cell Line MDA-MB-435 Homo sapiens TGI = 1949.84 nM PMID[473001]
NPT400 Cell Line MDA-MB-435 Homo sapiens LC50 = 8709.64 nM PMID[473001]
NPT81 Cell Line A549 Homo sapiens EC50 = 260.0 nM PMID[473002]
NPT1535 Cell Line U-87 MG Homo sapiens EC50 = 200.0 nM PMID[473002]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 > 10.0 nM PMID[473001]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. TGI = 363.08 nM PMID[473001]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. LC50 > 100000.0 nM PMID[473001]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC158784 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.993 High Similarity NPC302915
0.993 High Similarity NPC2745
0.9861 High Similarity NPC325860
0.9861 High Similarity NPC157783
0.986 High Similarity NPC195561
0.9859 High Similarity NPC212142
0.9448 High Similarity NPC473876
0.9379 High Similarity NPC474397
0.9375 High Similarity NPC90645
0.9375 High Similarity NPC472457
0.9324 High Similarity NPC160196
0.931 High Similarity NPC233980
0.9306 High Similarity NPC473845
0.9241 High Similarity NPC469557
0.9231 High Similarity NPC35216
0.92 High Similarity NPC80918
0.92 High Similarity NPC188578
0.9172 High Similarity NPC473108
0.9172 High Similarity NPC50250
0.9167 High Similarity NPC2613
0.9167 High Similarity NPC475891
0.9167 High Similarity NPC59841
0.9167 High Similarity NPC204347
0.9167 High Similarity NPC323126
0.9116 High Similarity NPC21776
0.9116 High Similarity NPC101376
0.9116 High Similarity NPC16269
0.9097 High Similarity NPC471389
0.9097 High Similarity NPC265075
0.9091 High Similarity NPC260741
0.9091 High Similarity NPC471388
0.9091 High Similarity NPC70682
0.9085 High Similarity NPC472800
0.906 High Similarity NPC477612
0.9048 High Similarity NPC260397
0.9041 High Similarity NPC469795
0.9041 High Similarity NPC280092
0.9041 High Similarity NPC45257
0.9041 High Similarity NPC63879
0.9041 High Similarity NPC93323
0.9041 High Similarity NPC12641
0.9028 High Similarity NPC259519
0.9028 High Similarity NPC198038
0.9014 High Similarity NPC61946
0.8993 High Similarity NPC211561
0.898 High Similarity NPC221318
0.898 High Similarity NPC181615
0.8973 High Similarity NPC102044
0.8973 High Similarity NPC85264
0.8973 High Similarity NPC47633
0.8973 High Similarity NPC474104
0.8973 High Similarity NPC477616
0.8966 High Similarity NPC87725
0.8966 High Similarity NPC178054
0.8966 High Similarity NPC263261
0.8958 High Similarity NPC127218
0.8958 High Similarity NPC245207
0.8958 High Similarity NPC184613
0.8958 High Similarity NPC32630
0.8958 High Similarity NPC319647
0.8958 High Similarity NPC25966
0.8951 High Similarity NPC248727
0.8951 High Similarity NPC162659
0.8951 High Similarity NPC227503
0.8951 High Similarity NPC173660
0.8951 High Similarity NPC302701
0.8951 High Similarity NPC470802
0.8951 High Similarity NPC306441
0.8951 High Similarity NPC270456
0.8951 High Similarity NPC265433
0.8951 High Similarity NPC269091
0.8951 High Similarity NPC474639
0.8951 High Similarity NPC16435
0.8951 High Similarity NPC230734
0.8919 High Similarity NPC471608
0.8919 High Similarity NPC112251
0.8904 High Similarity NPC107161
0.8897 High Similarity NPC184797
0.8897 High Similarity NPC266197
0.8897 High Similarity NPC291101
0.8897 High Similarity NPC27495
0.8897 High Similarity NPC309124
0.8897 High Similarity NPC234568
0.8889 High Similarity NPC276490
0.8889 High Similarity NPC211549
0.8889 High Similarity NPC474282
0.8889 High Similarity NPC477938
0.8889 High Similarity NPC103976
0.8889 High Similarity NPC326797
0.8889 High Similarity NPC102904
0.8889 High Similarity NPC107551
0.8889 High Similarity NPC176051
0.8881 High Similarity NPC195022
0.8881 High Similarity NPC164787
0.8881 High Similarity NPC474206
0.8881 High Similarity NPC112246
0.8881 High Similarity NPC121812
0.8881 High Similarity NPC151224
0.8881 High Similarity NPC470356
0.8881 High Similarity NPC94750
0.8881 High Similarity NPC234333
0.8881 High Similarity NPC260898
0.8881 High Similarity NPC473413
0.8881 High Similarity NPC112939
0.8881 High Similarity NPC47398
0.8873 High Similarity NPC263064
0.8859 High Similarity NPC170103
0.8859 High Similarity NPC204770
0.8859 High Similarity NPC108811
0.8859 High Similarity NPC236202
0.8859 High Similarity NPC202742
0.8859 High Similarity NPC82917
0.8859 High Similarity NPC263940
0.8859 High Similarity NPC70409
0.8859 High Similarity NPC18185
0.8859 High Similarity NPC58190
0.8859 High Similarity NPC262911
0.8859 High Similarity NPC294558
0.8844 High Similarity NPC258083
0.8836 High Similarity NPC71046
0.8836 High Similarity NPC247291
0.8828 High Similarity NPC232164
0.8828 High Similarity NPC473739
0.8828 High Similarity NPC6300
0.8828 High Similarity NPC230124
0.8828 High Similarity NPC236306
0.8828 High Similarity NPC114171
0.8828 High Similarity NPC475836
0.8828 High Similarity NPC19869
0.8819 High Similarity NPC327735
0.8819 High Similarity NPC472334
0.8819 High Similarity NPC68292
0.8819 High Similarity NPC126101
0.8819 High Similarity NPC472336
0.8819 High Similarity NPC234952
0.8816 High Similarity NPC21902
0.8811 High Similarity NPC317380
0.8811 High Similarity NPC478085
0.8808 High Similarity NPC183380
0.8808 High Similarity NPC469706
0.8808 High Similarity NPC260781
0.8808 High Similarity NPC218041
0.8808 High Similarity NPC182368
0.8808 High Similarity NPC145979
0.8808 High Similarity NPC9933
0.8808 High Similarity NPC469707
0.8808 High Similarity NPC185955
0.8808 High Similarity NPC225815
0.8808 High Similarity NPC214326
0.88 High Similarity NPC227516
0.88 High Similarity NPC20757
0.8792 High Similarity NPC324492
0.8792 High Similarity NPC475872
0.8792 High Similarity NPC96576
0.8792 High Similarity NPC317053
0.8776 High Similarity NPC186033
0.8776 High Similarity NPC175838
0.8767 High Similarity NPC34431
0.8767 High Similarity NPC73505
0.8767 High Similarity NPC308768
0.8767 High Similarity NPC295719
0.8767 High Similarity NPC254759
0.8767 High Similarity NPC165026
0.8767 High Similarity NPC160283
0.8767 High Similarity NPC12668
0.8767 High Similarity NPC22317
0.8759 High Similarity NPC242715
0.8759 High Similarity NPC266006
0.8759 High Similarity NPC56329
0.8758 High Similarity NPC78809
0.875 High Similarity NPC327382
0.875 High Similarity NPC313081
0.875 High Similarity NPC472337
0.875 High Similarity NPC256262
0.8742 High Similarity NPC476969
0.8742 High Similarity NPC44452
0.8741 High Similarity NPC11060
0.8741 High Similarity NPC92805
0.8741 High Similarity NPC475840
0.8733 High Similarity NPC327412
0.8733 High Similarity NPC320970
0.8733 High Similarity NPC328567
0.8733 High Similarity NPC320671
0.8732 High Similarity NPC103799
0.8716 High Similarity NPC469630
0.8707 High Similarity NPC311530
0.8701 High Similarity NPC159922
0.8699 High Similarity NPC220344
0.8699 High Similarity NPC212942
0.8699 High Similarity NPC292882
0.8699 High Similarity NPC243996
0.8699 High Similarity NPC105847
0.8699 High Similarity NPC29868
0.8699 High Similarity NPC22517
0.8699 High Similarity NPC218131
0.8699 High Similarity NPC243759
0.8699 High Similarity NPC132804
0.8699 High Similarity NPC79622
0.8699 High Similarity NPC275061
0.8693 High Similarity NPC226809

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC158784 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8671 High Similarity NPD1613 Approved
0.8671 High Similarity NPD1612 Clinical (unspecified phase)
0.8531 High Similarity NPD6410 Clinical (unspecified phase)
0.8531 High Similarity NPD4907 Clinical (unspecified phase)
0.8462 Intermediate Similarity NPD3027 Phase 3
0.8456 Intermediate Similarity NPD6674 Discontinued
0.8392 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.8392 Intermediate Similarity NPD4908 Phase 1
0.8333 Intermediate Similarity NPD4625 Phase 3
0.8322 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.8182 Intermediate Similarity NPD5844 Phase 1
0.8092 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.8042 Intermediate Similarity NPD4749 Approved
0.8028 Intermediate Similarity NPD1610 Phase 2
0.8 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7945 Intermediate Similarity NPD2861 Phase 2
0.7919 Intermediate Similarity NPD3620 Phase 2
0.7919 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7904 Intermediate Similarity NPD7228 Approved
0.7895 Intermediate Similarity NPD6100 Approved
0.7895 Intermediate Similarity NPD6099 Approved
0.7888 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7826 Intermediate Similarity NPD37 Approved
0.7826 Intermediate Similarity NPD1934 Approved
0.7805 Intermediate Similarity NPD6234 Discontinued
0.7791 Intermediate Similarity NPD4966 Approved
0.7791 Intermediate Similarity NPD4967 Phase 2
0.7791 Intermediate Similarity NPD4965 Approved
0.7784 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD6166 Phase 2
0.7748 Intermediate Similarity NPD5735 Approved
0.774 Intermediate Similarity NPD8651 Approved
0.774 Intermediate Similarity NPD6696 Suspended
0.7701 Intermediate Similarity NPD4663 Approved
0.7692 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7688 Intermediate Similarity NPD1653 Approved
0.7683 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7682 Intermediate Similarity NPD4060 Phase 1
0.7657 Intermediate Similarity NPD7906 Approved
0.7651 Intermediate Similarity NPD5494 Approved
0.7633 Intermediate Similarity NPD7473 Discontinued
0.7632 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7632 Intermediate Similarity NPD5124 Phase 1
0.7622 Intermediate Similarity NPD1548 Phase 1
0.761 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7605 Intermediate Similarity NPD7199 Phase 2
0.7602 Intermediate Similarity NPD7074 Phase 3
0.7561 Intermediate Similarity NPD2801 Approved
0.756 Intermediate Similarity NPD6232 Discontinued
0.756 Intermediate Similarity NPD3051 Approved
0.7544 Intermediate Similarity NPD7054 Approved
0.7529 Intermediate Similarity NPD7311 Approved
0.7529 Intermediate Similarity NPD4578 Approved
0.7529 Intermediate Similarity NPD7310 Approved
0.7529 Intermediate Similarity NPD7312 Approved
0.7529 Intermediate Similarity NPD7313 Approved
0.7529 Intermediate Similarity NPD4577 Approved
0.7515 Intermediate Similarity NPD2970 Approved
0.7515 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7515 Intermediate Similarity NPD2969 Approved
0.7514 Intermediate Similarity NPD7240 Approved
0.75 Intermediate Similarity NPD8127 Discontinued
0.75 Intermediate Similarity NPD7472 Approved
0.75 Intermediate Similarity NPD6959 Discontinued
0.7486 Intermediate Similarity NPD7309 Approved
0.7485 Intermediate Similarity NPD4380 Phase 2
0.7471 Intermediate Similarity NPD2489 Approved
0.7471 Intermediate Similarity NPD7549 Discontinued
0.7471 Intermediate Similarity NPD27 Approved
0.7467 Intermediate Similarity NPD3018 Phase 2
0.7443 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7432 Intermediate Similarity NPD5327 Phase 3
0.7419 Intermediate Similarity NPD4538 Approved
0.7419 Intermediate Similarity NPD4537 Clinical (unspecified phase)
0.7419 Intermediate Similarity NPD4536 Approved
0.7413 Intermediate Similarity NPD6671 Approved
0.7413 Intermediate Similarity NPD7157 Approved
0.7412 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7394 Intermediate Similarity NPD5283 Phase 1
0.7391 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD7447 Phase 1
0.7389 Intermediate Similarity NPD5762 Approved
0.7389 Intermediate Similarity NPD5763 Approved
0.7371 Intermediate Similarity NPD7808 Phase 3
0.7368 Intermediate Similarity NPD7095 Approved
0.7361 Intermediate Similarity NPD7340 Approved
0.7355 Intermediate Similarity NPD6353 Approved
0.7355 Intermediate Similarity NPD4097 Suspended
0.7353 Intermediate Similarity NPD3787 Discontinued
0.7338 Intermediate Similarity NPD4140 Approved
0.7333 Intermediate Similarity NPD3094 Phase 2
0.7329 Intermediate Similarity NPD7213 Phase 3
0.7329 Intermediate Similarity NPD7212 Phase 2
0.7321 Intermediate Similarity NPD7075 Discontinued
0.7321 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD2982 Phase 2
0.7315 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD2983 Phase 2
0.7314 Intermediate Similarity NPD6559 Discontinued
0.7314 Intermediate Similarity NPD7251 Discontinued
0.7297 Intermediate Similarity NPD1091 Approved
0.7288 Intermediate Similarity NPD8054 Approved
0.7288 Intermediate Similarity NPD8053 Approved
0.7283 Intermediate Similarity NPD3818 Discontinued
0.7278 Intermediate Similarity NPD7266 Discontinued
0.7273 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD5058 Phase 3
0.7262 Intermediate Similarity NPD3882 Suspended
0.7261 Intermediate Similarity NPD5588 Approved
0.7261 Intermediate Similarity NPD5960 Phase 3
0.7257 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD6797 Phase 2
0.725 Intermediate Similarity NPD4628 Phase 3
0.725 Intermediate Similarity NPD7466 Approved
0.7248 Intermediate Similarity NPD2981 Phase 2
0.7246 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD5929 Approved
0.7246 Intermediate Similarity NPD7819 Suspended
0.7246 Intermediate Similarity NPD8455 Phase 2
0.7246 Intermediate Similarity NPD1465 Phase 2
0.7241 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD6072 Discontinued
0.7229 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD1511 Approved
0.7222 Intermediate Similarity NPD7040 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD7041 Phase 2
0.7219 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD7831 Phase 2
0.7219 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD7833 Phase 2
0.7212 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7208 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7202 Intermediate Similarity NPD3817 Phase 2
0.7197 Intermediate Similarity NPD7097 Phase 1
0.7188 Intermediate Similarity NPD5177 Phase 3
0.7188 Intermediate Similarity NPD1652 Phase 2
0.7184 Intermediate Similarity NPD3751 Discontinued
0.7181 Intermediate Similarity NPD3092 Approved
0.7179 Intermediate Similarity NPD3657 Discovery
0.7178 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.717 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD7768 Phase 2
0.716 Intermediate Similarity NPD7124 Phase 2
0.7153 Intermediate Similarity NPD1398 Phase 1
0.7152 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD7229 Phase 3
0.7151 Intermediate Similarity NPD6071 Discontinued
0.7143 Intermediate Similarity NPD3892 Phase 2
0.7143 Intermediate Similarity NPD6331 Phase 2
0.7143 Intermediate Similarity NPD7741 Discontinued
0.7143 Intermediate Similarity NPD4110 Phase 3
0.7143 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD8312 Approved
0.7135 Intermediate Similarity NPD8313 Approved
0.7134 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD1512 Approved
0.7133 Intermediate Similarity NPD228 Approved
0.7127 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD2424 Discontinued
0.7115 Intermediate Similarity NPD2238 Phase 2
0.7108 Intermediate Similarity NPD4005 Discontinued
0.7101 Intermediate Similarity NPD2560 Approved
0.7101 Intermediate Similarity NPD2563 Approved
0.7101 Intermediate Similarity NPD6374 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD2677 Approved
0.7097 Intermediate Similarity NPD7985 Registered
0.7097 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD7843 Approved
0.7073 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD7446 Clinical (unspecified phase)
0.707 Intermediate Similarity NPD6355 Discontinued
0.7067 Intermediate Similarity NPD3705 Approved
0.7066 Intermediate Similarity NPD4675 Approved
0.7066 Intermediate Similarity NPD6599 Discontinued
0.7066 Intermediate Similarity NPD4678 Approved
0.7063 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD4624 Approved
0.7047 Intermediate Similarity NPD5125 Phase 3
0.7047 Intermediate Similarity NPD5126 Approved
0.7045 Intermediate Similarity NPD8156 Discontinued
0.7042 Intermediate Similarity NPD2684 Approved
0.7037 Intermediate Similarity NPD8166 Discontinued
0.7037 Intermediate Similarity NPD7680 Approved
0.7037 Intermediate Similarity NPD3750 Approved
0.7035 Intermediate Similarity NPD4666 Phase 3
0.703 Intermediate Similarity NPD7314 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD3091 Approved
0.7024 Intermediate Similarity NPD7411 Suspended
0.7021 Intermediate Similarity NPD2494 Approved
0.7021 Intermediate Similarity NPD2493 Approved
0.7019 Intermediate Similarity NPD1549 Phase 2
0.7006 Intermediate Similarity NPD6055 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD1558 Phase 1
0.7 Intermediate Similarity NPD4582 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data