Structure

Physi-Chem Properties

Molecular Weight:  398.35
Volume:  462.136
LogP:  7.247
LogD:  6.131
LogS:  -6.861
# Rotatable Bonds:  4
TPSA:  20.23
# H-Bond Aceptor:  1
# H-Bond Donor:  1
# Rings:  4
# Heavy Atoms:  1

MedChem Properties

QED Drug-Likeness Score:  0.489
Synthetic Accessibility Score:  4.651
Fsp3:  0.857
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.623
MDCK Permeability:  3.282806937932037e-05
Pgp-inhibitor:  0.433
Pgp-substrate:  0.268
Human Intestinal Absorption (HIA):  0.019
20% Bioavailability (F20%):  0.992
30% Bioavailability (F30%):  0.97

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.006
Plasma Protein Binding (PPB):  88.7933349609375%
Volume Distribution (VD):  1.144
Pgp-substrate:  1.566771388053894%

ADMET: Metabolism

CYP1A2-inhibitor:  0.137
CYP1A2-substrate:  0.412
CYP2C19-inhibitor:  0.13
CYP2C19-substrate:  0.924
CYP2C9-inhibitor:  0.284
CYP2C9-substrate:  0.058
CYP2D6-inhibitor:  0.028
CYP2D6-substrate:  0.306
CYP3A4-inhibitor:  0.847
CYP3A4-substrate:  0.707

ADMET: Excretion

Clearance (CL):  3.375
Half-life (T1/2):  0.063

ADMET: Toxicity

hERG Blockers:  0.016
Human Hepatotoxicity (H-HT):  0.138
Drug-inuced Liver Injury (DILI):  0.023
AMES Toxicity:  0.002
Rat Oral Acute Toxicity:  0.364
Maximum Recommended Daily Dose:  0.947
Skin Sensitization:  0.391
Carcinogencity:  0.006
Eye Corrosion:  0.071
Eye Irritation:  0.266
Respiratory Toxicity:  0.607

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Similar NPs/Drugs  

  Natural Product: NPC134330

Natural Product ID:  NPC134330
Common Name*:   5,6-Dihydro Ergosterol
IUPAC Name:   (3S,5S,9R,10S,13R,14R,17R)-17-[(E,2R,5R)-5,6-dimethylhept-3-en-2-yl]-10,13-dimethyl-2,3,4,5,6,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol
Synonyms:   5,6-Dihydro Ergosterol
Standard InCHIKey:  QOXPZVASXWSKKU-UEIWAABPSA-N
Standard InCHI:  InChI=1S/C28H46O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h7-8,10,18-22,24-26,29H,9,11-17H2,1-6H3/b8-7+/t19-,20+,21-,22-,24+,25-,26-,27-,28+/m0/s1
SMILES:  CC(C)[C@@H](C)/C=C/[C@@H](C)[C@H]1CC[C@H]2C3=CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL463973
PubChem CID:   5283628
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000258] Steroids and steroid derivatives
        • [CHEMONTID:0003567] Ergostane steroids
          • [CHEMONTID:0001403] Ergosterols and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.phytochem.2005.10.025]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)91122-1]
NPO6468 Ganoderma pfeifferi Species Polyporaceae Eukaryota n.a. n.a. n.a. PMID[10757736]
NPO29263 Tylopilus plumbeoviolaceus Species Boletaceae Eukaryota n.a. fruit body n.a. PMID[10785434]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[11520245]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[12045343]
NPO15389 Ganoderma annulare Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[12781809]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[14695801]
NPO25515 Garcinia speciosa Species Clusiaceae Eukaryota barks n.a. n.a. PMID[15620248]
NPO6468 Ganoderma pfeifferi Species Polyporaceae Eukaryota n.a. fruit body n.a. PMID[16378363]
NPO6468 Ganoderma pfeifferi Species Polyporaceae Eukaryota n.a. n.a. n.a. PMID[16378363]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. Sri Lankan n.a. PMID[16933889]
NPO18766 Inonotus obliquus Species Hymenochaetaceae Eukaryota sclerotia n.a. n.a. PMID[17049251]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[1791484]
NPO18766 Inonotus obliquus Species Hymenochaetaceae Eukaryota sclerotia n.a. n.a. PMID[18387711]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. spore n.a. PMID[18827358]
NPO24708 Mikania micrantha Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[19267453]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies Nagano, Japan 2008-MAY PMID[20039640]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[20384295]
NPO23707 Sinularia gyrosa Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[20430633]
NPO23707 Sinularia gyrosa Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[20499851]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies n.a. n.a. PMID[20702092]
NPO425 Streptomyces cattleya Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21263049]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies n.a. n.a. PMID[21924611]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[22014750]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[22044278]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting body n.a. n.a. PMID[22047696]
NPO20231 Sarcodon scabrosus Species Thelephoraceae Eukaryota n.a. n.a. n.a. PMID[22401866]
NPO10876 Euphorbia granulata Species Euphorbiaceae Eukaryota n.a. whole plant n.a. PMID[23580316]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. PMID[24014097]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. PMID[24128451]
NPO18766 Inonotus obliquus Species Hymenochaetaceae Eukaryota n.a. n.a. n.a. PMID[24359303]
NPO23998 Auxarthron reticulatum Species Onygenaceae Eukaryota n.a. n.a. n.a. PMID[24900275]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[26222905]
NPO425 Streptomyces cattleya Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26240322]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. PMID[27996259]
NPO14563 Kalimeris shimadae Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31804830]
NPO6403 Phlegmariurus squarrosus Species Lycopodiaceae Eukaryota n.a. n.a. n.a. PMID[32941036]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[9635497]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[9917288]
NPO20231 Sarcodon scabrosus Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota n.a. n.a. Database[FooDB]
NPO27951 Vigna mungo Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota Fruits n.a. Database[FooDB]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO27951 Vigna mungo Species Fabaceae Eukaryota Leaf Diffusate n.a. n.a. Database[FooDB]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO27951 Vigna mungo Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO27951 Vigna mungo Species Fabaceae Eukaryota Sprout Seedling n.a. n.a. Database[FooDB]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota Sprout Seedling n.a. n.a. Database[FooDB]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO8999 Juniperus occidentalis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7276 Mitragyna macrophylla Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28627 Coptis trifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22408 Aconitum polyschistum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25515 Garcinia speciosa Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3354 Fomes officinalis Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO22408 Aconitum polyschistum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14438 Coussarea brevicaulis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28627 Coptis trifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10400 Pothos chinensis Species Araceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24950 Eupatorium aschenbornianum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7276 Mitragyna macrophylla Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8999 Juniperus occidentalis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3354 Fomes officinalis Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25515 Garcinia speciosa Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16609 Ganoderma sinense Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12787 Phora hyperborea Species Phoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22408 Aconitum polyschistum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15089 Stylocheilus longicaudus Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6217 Castanopsis fissa Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25683 Columba livia Species Columbidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4237 Vepris madagascarica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1827 Morinda elliptica Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10585 Yarrowia lipolytica Species Dipodascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6403 Phlegmariurus squarrosus Species Lycopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25341 Sanango racemosum Species Gesneriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5585 Cassia greggii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24662 Ulmus laevis Species Ulmaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9507 Agathosma mundtii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10400 Pothos chinensis Species Araceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24708 Mikania micrantha Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7245 Lamprometra klunzingeri Species Mariametridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13911 Eunicella stricta Species Gorgoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27375 Sphingomonas paucimobilis Species Sphingomonadaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO10876 Euphorbia granulata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24693 Prunus cerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25515 Garcinia speciosa Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20331 Aerva tomentosa Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24854 Beltrania rhombica Species Beltraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24895 Parmelia springtonensis Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16609 Ganoderma sinense Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12310 Viburnum orientale Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3205 Dracocephalum heterophyllum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15389 Ganoderma annulare Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6468 Ganoderma pfeifferi Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23134 Artemisia kaschgarica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25115 Psychotria calocarpa Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24950 Eupatorium aschenbornianum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14438 Coussarea brevicaulis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14696 Frullania inflata Species Frullaniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14563 Kalimeris shimadae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11201 Barleria strigosa Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17272 Cotoneaster simonsii Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25602 Crotalaria barbata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23998 Auxarthron reticulatum Species Onygenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7576 Brassica oleracea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15560 Penicillium camemberti Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO341 Xylaria obovata Species Xylariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23707 Sinularia gyrosa Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24142 Cereus ocamponis Species Sagartiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8579 Pestalotiopsis longiseta Species Sporocadaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25399 Patrinia intermedia Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27951 Vigna mungo Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7276 Mitragyna macrophylla Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29263 Tylopilus plumbeoviolaceus Species Boletaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25241 Cordyla africana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12142 Solanum nodiflorum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8999 Juniperus occidentalis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28627 Coptis trifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13627 Sphaeria macula n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO23866 Anisocycla cymosa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18766 Inonotus obliquus Species Hymenochaetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15346 Remijia bicolorata Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO425 Streptomyces cattleya Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6970 Wyethia angustifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25313 Satureja douglasii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12593 Plectranthus grandidentatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13953 Gouania lupuloides Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14984 Agelenopsis aperta Species Agelenidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1599 Ormosia pachycarpa Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11551 Paliurus ramosissimus Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3354 Fomes officinalis Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20231 Sarcodon scabrosus Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4626 Pimpinella anisum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24242 Haminoea cymbalum Species Haminoeidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT616 Cell Line MDCK Canis lupus familiaris TC50 = 404.6 uM PMID[502550]
NPT742 Organism Influenza A virus Influenza A virus IC50 = 0.78 ug.mL-1 PMID[502549]
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 IC50 = 0.03 ug.mL-1 PMID[502549]
NPT70 Organism Respiratory syncytial virus Respiratory syncytial virus IC50 = 50500.0 nM PMID[502550]
NPT27 Others Unspecified TC50 = 303.4 uM PMID[502550]
NPT27 Others Unspecified TI = 6.0 n.a. PMID[502550]
NPT336 Organism Human parainfluenza virus 3 Human parainfluenza virus 3 IC50 = 50500.0 nM PMID[502550]
NPT742 Organism Influenza A virus Influenza A virus IC50 = 202300.0 nM PMID[502550]
NPT27 Others Unspecified TI = 2.0 n.a. PMID[502550]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 43.8 % PMID[502553]
NPT2 Others Unspecified Survival = 82.0 % PMID[502553]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC134330 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC129165
0.9857 High Similarity NPC141071
0.9857 High Similarity NPC471723
0.9857 High Similarity NPC257347
0.9718 High Similarity NPC189883
0.9718 High Similarity NPC113733
0.9718 High Similarity NPC470362
0.9577 High Similarity NPC22105
0.9577 High Similarity NPC288035
0.9577 High Similarity NPC134847
0.9577 High Similarity NPC28657
0.9577 High Similarity NPC136188
0.9577 High Similarity NPC230301
0.9577 High Similarity NPC285893
0.9577 High Similarity NPC304309
0.9577 High Similarity NPC162742
0.9452 High Similarity NPC76931
0.9452 High Similarity NPC18603
0.9452 High Similarity NPC307965
0.9444 High Similarity NPC300324
0.9444 High Similarity NPC321016
0.9444 High Similarity NPC321381
0.9444 High Similarity NPC107059
0.9444 High Similarity NPC202642
0.9444 High Similarity NPC237460
0.9444 High Similarity NPC46160
0.9444 High Similarity NPC240604
0.9324 High Similarity NPC30986
0.9324 High Similarity NPC1319
0.9324 High Similarity NPC209430
0.9315 High Similarity NPC318495
0.9315 High Similarity NPC214570
0.9315 High Similarity NPC34019
0.9315 High Similarity NPC198968
0.9315 High Similarity NPC155986
0.9306 High Similarity NPC121744
0.9306 High Similarity NPC322353
0.9306 High Similarity NPC118508
0.9296 High Similarity NPC182717
0.92 High Similarity NPC236112
0.92 High Similarity NPC241290
0.92 High Similarity NPC209944
0.92 High Similarity NPC234193
0.92 High Similarity NPC164840
0.9189 High Similarity NPC275910
0.9189 High Similarity NPC285761
0.9189 High Similarity NPC167037
0.9189 High Similarity NPC65897
0.9189 High Similarity NPC474216
0.9189 High Similarity NPC477522
0.9189 High Similarity NPC85346
0.9189 High Similarity NPC473943
0.9189 High Similarity NPC138621
0.9189 High Similarity NPC87604
0.9189 High Similarity NPC205455
0.9189 High Similarity NPC186191
0.9189 High Similarity NPC244385
0.9189 High Similarity NPC302041
0.9189 High Similarity NPC6978
0.9178 High Similarity NPC244488
0.9178 High Similarity NPC73875
0.9178 High Similarity NPC247325
0.9167 High Similarity NPC469593
0.9167 High Similarity NPC469533
0.9167 High Similarity NPC469534
0.9079 High Similarity NPC47761
0.9079 High Similarity NPC264245
0.9079 High Similarity NPC474531
0.9067 High Similarity NPC28862
0.9067 High Similarity NPC109546
0.9067 High Similarity NPC47982
0.9067 High Similarity NPC328714
0.9067 High Similarity NPC143182
0.9067 High Similarity NPC84694
0.9067 High Similarity NPC273410
0.9067 High Similarity NPC81306
0.9067 High Similarity NPC80530
0.9028 High Similarity NPC201373
0.9028 High Similarity NPC474140
0.9028 High Similarity NPC471799
0.9014 High Similarity NPC145498
0.9014 High Similarity NPC475728
0.9 High Similarity NPC160209
0.8974 High Similarity NPC470077
0.8961 High Similarity NPC470049
0.8961 High Similarity NPC87489
0.8961 High Similarity NPC296701
0.8961 High Similarity NPC30166
0.8961 High Similarity NPC50964
0.8961 High Similarity NPC49964
0.8961 High Similarity NPC218616
0.8947 High Similarity NPC13554
0.8947 High Similarity NPC322313
0.8947 High Similarity NPC102253
0.8947 High Similarity NPC236237
0.8947 High Similarity NPC26117
0.8933 High Similarity NPC318136
0.8933 High Similarity NPC477514
0.8933 High Similarity NPC312328
0.8919 High Similarity NPC96319
0.8904 High Similarity NPC477138
0.8904 High Similarity NPC91858
0.8904 High Similarity NPC471797
0.8904 High Similarity NPC243342
0.8904 High Similarity NPC100334
0.8889 High Similarity NPC110799
0.8889 High Similarity NPC242001
0.8889 High Similarity NPC111234
0.8861 High Similarity NPC318390
0.8857 High Similarity NPC197805
0.8846 High Similarity NPC477818
0.8846 High Similarity NPC317458
0.8831 High Similarity NPC23852
0.8831 High Similarity NPC7505
0.8831 High Similarity NPC474752
0.8831 High Similarity NPC209620
0.8831 High Similarity NPC470383
0.8831 High Similarity NPC474683
0.8831 High Similarity NPC474759
0.8831 High Similarity NPC474731
0.8831 High Similarity NPC82986
0.88 High Similarity NPC471798
0.8784 High Similarity NPC103822
0.8784 High Similarity NPC291503
0.8784 High Similarity NPC471468
0.8767 High Similarity NPC195489
0.875 High Similarity NPC45296
0.875 High Similarity NPC261266
0.8734 High Similarity NPC238485
0.8734 High Similarity NPC205845
0.8734 High Similarity NPC209802
0.8734 High Similarity NPC124172
0.8734 High Similarity NPC231310
0.8734 High Similarity NPC474047
0.8734 High Similarity NPC33913
0.8734 High Similarity NPC478102
0.8732 High Similarity NPC208999
0.8718 High Similarity NPC189972
0.8718 High Similarity NPC201852
0.8718 High Similarity NPC470614
0.8718 High Similarity NPC1272
0.8718 High Similarity NPC5985
0.8718 High Similarity NPC20853
0.8718 High Similarity NPC101462
0.8718 High Similarity NPC248886
0.8718 High Similarity NPC202389
0.8714 High Similarity NPC286669
0.8714 High Similarity NPC222366
0.8714 High Similarity NPC476039
0.8667 High Similarity NPC122418
0.8667 High Similarity NPC106432
0.8667 High Similarity NPC290598
0.8667 High Similarity NPC265328
0.8667 High Similarity NPC27765
0.8667 High Similarity NPC120098
0.8667 High Similarity NPC30590
0.8649 High Similarity NPC145552
0.8649 High Similarity NPC254509
0.8649 High Similarity NPC192638
0.8649 High Similarity NPC25511
0.8649 High Similarity NPC49168
0.8649 High Similarity NPC62657
0.8649 High Similarity NPC196358
0.8649 High Similarity NPC5046
0.863 High Similarity NPC167706
0.8625 High Similarity NPC470360
0.8625 High Similarity NPC274448
0.8625 High Similarity NPC157257
0.8608 High Similarity NPC475789
0.8608 High Similarity NPC134481
0.8608 High Similarity NPC474634
0.8608 High Similarity NPC470558
0.8608 High Similarity NPC82623
0.8608 High Similarity NPC113978
0.8608 High Similarity NPC141941
0.8608 High Similarity NPC470384
0.8608 High Similarity NPC207013
0.8608 High Similarity NPC110778
0.8608 High Similarity NPC193870
0.859 High Similarity NPC6707
0.8571 High Similarity NPC472463
0.8553 High Similarity NPC91594
0.8553 High Similarity NPC34177
0.8553 High Similarity NPC472805
0.8553 High Similarity NPC101475
0.8553 High Similarity NPC90979
0.8553 High Similarity NPC157996
0.8553 High Similarity NPC40394
0.8537 High Similarity NPC133588
0.8533 High Similarity NPC70982
0.8533 High Similarity NPC66566
0.8533 High Similarity NPC3403
0.8533 High Similarity NPC34700
0.8533 High Similarity NPC212879
0.8533 High Similarity NPC240235
0.8533 High Similarity NPC200243
0.8533 High Similarity NPC104387
0.8533 High Similarity NPC477923
0.8533 High Similarity NPC185536
0.8533 High Similarity NPC138374

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC134330 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9577 High Similarity NPD7339 Approved
0.9577 High Similarity NPD6942 Approved
0.8947 High Similarity NPD7525 Registered
0.8919 High Similarity NPD3701 Clinical (unspecified phase)
0.8649 High Similarity NPD4784 Approved
0.8649 High Similarity NPD4785 Approved
0.863 High Similarity NPD7150 Approved
0.863 High Similarity NPD7151 Approved
0.863 High Similarity NPD7152 Approved
0.863 High Similarity NPD4243 Approved
0.85 High Similarity NPD4786 Approved
0.8493 Intermediate Similarity NPD7143 Approved
0.8493 Intermediate Similarity NPD7144 Approved
0.84 Intermediate Similarity NPD6924 Approved
0.84 Intermediate Similarity NPD6926 Approved
0.8356 Intermediate Similarity NPD6922 Approved
0.8356 Intermediate Similarity NPD6923 Approved
0.8333 Intermediate Similarity NPD7645 Phase 2
0.825 Intermediate Similarity NPD3667 Approved
0.8235 Intermediate Similarity NPD6079 Approved
0.8214 Intermediate Similarity NPD5328 Approved
0.8182 Intermediate Similarity NPD6933 Approved
0.8072 Intermediate Similarity NPD3618 Phase 1
0.8052 Intermediate Similarity NPD5275 Approved
0.8052 Intermediate Similarity NPD4190 Phase 3
0.8 Intermediate Similarity NPD4748 Discontinued
0.7976 Intermediate Similarity NPD4751 Clinical (unspecified phase)
0.7875 Intermediate Similarity NPD6929 Approved
0.7875 Intermediate Similarity NPD4195 Approved
0.7848 Intermediate Similarity NPD6932 Approved
0.7831 Intermediate Similarity NPD3666 Approved
0.7831 Intermediate Similarity NPD3133 Approved
0.7831 Intermediate Similarity NPD3665 Phase 1
0.7778 Intermediate Similarity NPD6931 Approved
0.7778 Intermediate Similarity NPD6930 Phase 2
0.7778 Intermediate Similarity NPD7509 Discontinued
0.775 Intermediate Similarity NPD7145 Approved
0.7727 Intermediate Similarity NPD4202 Approved
0.7667 Intermediate Similarity NPD5222 Approved
0.7667 Intermediate Similarity NPD5221 Approved
0.7667 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD5776 Phase 2
0.7625 Intermediate Similarity NPD6925 Approved
0.7595 Intermediate Similarity NPD8264 Approved
0.7582 Intermediate Similarity NPD5173 Approved
0.7561 Intermediate Similarity NPD7514 Phase 3
0.7531 Intermediate Similarity NPD7322 Clinical (unspecified phase)
0.7529 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.7528 Intermediate Similarity NPD6399 Phase 3
0.75 Intermediate Similarity NPD6695 Phase 3
0.7473 Intermediate Similarity NPD4697 Phase 3
0.747 Intermediate Similarity NPD6902 Approved
0.7442 Intermediate Similarity NPD5279 Phase 3
0.7439 Intermediate Similarity NPD6683 Phase 2
0.7419 Intermediate Similarity NPD5286 Approved
0.7419 Intermediate Similarity NPD4696 Approved
0.7419 Intermediate Similarity NPD5285 Approved
0.7412 Intermediate Similarity NPD7338 Clinical (unspecified phase)
0.7412 Intermediate Similarity NPD3668 Phase 3
0.7391 Intermediate Similarity NPD4755 Approved
0.7386 Intermediate Similarity NPD4753 Phase 2
0.7381 Intermediate Similarity NPD4221 Approved
0.7381 Intermediate Similarity NPD4223 Phase 3
0.7349 Intermediate Similarity NPD7332 Phase 2
0.734 Intermediate Similarity NPD5223 Approved
0.7326 Intermediate Similarity NPD6893 Approved
0.7326 Intermediate Similarity NPD5329 Approved
0.7312 Intermediate Similarity NPD5290 Discontinued
0.7263 Intermediate Similarity NPD5226 Approved
0.7263 Intermediate Similarity NPD4633 Approved
0.7263 Intermediate Similarity NPD5224 Approved
0.7263 Intermediate Similarity NPD5225 Approved
0.7263 Intermediate Similarity NPD5211 Phase 2
0.7234 Intermediate Similarity NPD4700 Approved
0.7222 Intermediate Similarity NPD7515 Phase 2
0.7209 Intermediate Similarity NPD4197 Approved
0.7188 Intermediate Similarity NPD5174 Approved
0.7188 Intermediate Similarity NPD5175 Approved
0.7179 Intermediate Similarity NPD4267 Clinical (unspecified phase)
0.7174 Intermediate Similarity NPD4629 Approved
0.7174 Intermediate Similarity NPD5210 Approved
0.7159 Intermediate Similarity NPD7750 Discontinued
0.7159 Intermediate Similarity NPD7524 Approved
0.7128 Intermediate Similarity NPD7638 Approved
0.7113 Intermediate Similarity NPD5141 Approved
0.7093 Intermediate Similarity NPD4788 Approved
0.7089 Intermediate Similarity NPD4787 Phase 1
0.7071 Intermediate Similarity NPD6881 Approved
0.7071 Intermediate Similarity NPD6899 Approved
0.7059 Intermediate Similarity NPD6898 Phase 1
0.7053 Intermediate Similarity NPD7640 Approved
0.7053 Intermediate Similarity NPD7639 Approved
0.7045 Intermediate Similarity NPD5205 Approved
0.7045 Intermediate Similarity NPD4138 Approved
0.7045 Intermediate Similarity NPD5330 Approved
0.7045 Intermediate Similarity NPD6409 Approved
0.7045 Intermediate Similarity NPD4689 Approved
0.7045 Intermediate Similarity NPD4688 Approved
0.7045 Intermediate Similarity NPD7146 Approved
0.7045 Intermediate Similarity NPD6684 Approved
0.7045 Intermediate Similarity NPD4690 Approved
0.7045 Intermediate Similarity NPD4693 Phase 3
0.7045 Intermediate Similarity NPD7521 Approved
0.7045 Intermediate Similarity NPD7334 Approved
0.7045 Intermediate Similarity NPD5690 Phase 2
0.7041 Intermediate Similarity NPD6675 Approved
0.7041 Intermediate Similarity NPD6402 Approved
0.7041 Intermediate Similarity NPD7128 Approved
0.7041 Intermediate Similarity NPD5739 Approved
0.7021 Intermediate Similarity NPD6083 Phase 2
0.7021 Intermediate Similarity NPD6084 Phase 2
0.701 Intermediate Similarity NPD4754 Approved
0.7 Intermediate Similarity NPD6051 Approved
0.7 Intermediate Similarity NPD4809 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD4808 Clinical (unspecified phase)
0.697 Remote Similarity NPD5697 Approved
0.6931 Remote Similarity NPD7290 Approved
0.6931 Remote Similarity NPD7102 Approved
0.6931 Remote Similarity NPD6883 Approved
0.6905 Remote Similarity NPD3617 Approved
0.69 Remote Similarity NPD4729 Approved
0.69 Remote Similarity NPD6011 Approved
0.69 Remote Similarity NPD4730 Approved
0.69 Remote Similarity NPD5168 Approved
0.69 Remote Similarity NPD7320 Approved
0.6889 Remote Similarity NPD5737 Approved
0.6889 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6889 Remote Similarity NPD6672 Approved
0.6889 Remote Similarity NPD6903 Approved
0.6889 Remote Similarity NPD4723 Approved
0.6889 Remote Similarity NPD4722 Approved
0.6882 Remote Similarity NPD7748 Approved
0.6869 Remote Similarity NPD4767 Approved
0.6869 Remote Similarity NPD4768 Approved
0.6863 Remote Similarity NPD6649 Approved
0.6863 Remote Similarity NPD6847 Approved
0.6863 Remote Similarity NPD8130 Phase 1
0.6863 Remote Similarity NPD6617 Approved
0.6863 Remote Similarity NPD6650 Approved
0.6863 Remote Similarity NPD6869 Approved
0.6854 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6854 Remote Similarity NPD5280 Approved
0.6854 Remote Similarity NPD4694 Approved
0.6848 Remote Similarity NPD8035 Phase 2
0.6848 Remote Similarity NPD8034 Phase 2
0.6848 Remote Similarity NPD7087 Discontinued
0.6832 Remote Similarity NPD6014 Approved
0.6832 Remote Similarity NPD6012 Approved
0.6832 Remote Similarity NPD6373 Approved
0.6832 Remote Similarity NPD6372 Approved
0.6832 Remote Similarity NPD6013 Approved
0.6829 Remote Similarity NPD6113 Clinical (unspecified phase)
0.68 Remote Similarity NPD5701 Approved
0.6796 Remote Similarity NPD6882 Approved
0.6796 Remote Similarity NPD8297 Approved
0.6765 Remote Similarity NPD5169 Approved
0.6765 Remote Similarity NPD5247 Approved
0.6765 Remote Similarity NPD5249 Phase 3
0.6765 Remote Similarity NPD5251 Approved
0.6765 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6765 Remote Similarity NPD5135 Approved
0.6765 Remote Similarity NPD5250 Approved
0.6765 Remote Similarity NPD5248 Approved
0.6765 Remote Similarity NPD4634 Approved
0.675 Remote Similarity NPD3700 Clinical (unspecified phase)
0.675 Remote Similarity NPD3699 Clinical (unspecified phase)
0.6733 Remote Similarity NPD5128 Approved
0.6699 Remote Similarity NPD5217 Approved
0.6699 Remote Similarity NPD5215 Approved
0.6699 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6699 Remote Similarity NPD5216 Approved
0.6699 Remote Similarity NPD5127 Approved
0.6667 Remote Similarity NPD4139 Approved
0.6667 Remote Similarity NPD4623 Approved
0.6667 Remote Similarity NPD6117 Approved
0.6667 Remote Similarity NPD5284 Approved
0.6667 Remote Similarity NPD4692 Approved
0.6667 Remote Similarity NPD7902 Approved
0.6667 Remote Similarity NPD4747 Approved
0.6667 Remote Similarity NPD6098 Approved
0.6667 Remote Similarity NPD5281 Approved
0.6667 Remote Similarity NPD7637 Suspended
0.6667 Remote Similarity NPD4519 Discontinued
0.6632 Remote Similarity NPD5695 Phase 3
0.6625 Remote Similarity NPD3621 Clinical (unspecified phase)
0.6604 Remote Similarity NPD6868 Approved
0.6598 Remote Similarity NPD5696 Approved
0.6588 Remote Similarity NPD6116 Phase 1
0.6575 Remote Similarity NPD342 Phase 1
0.6571 Remote Similarity NPD4632 Approved
0.6559 Remote Similarity NPD7136 Phase 2
0.6552 Remote Similarity NPD4695 Discontinued
0.6543 Remote Similarity NPD4137 Phase 3
0.6542 Remote Similarity NPD7115 Discovery
0.6512 Remote Similarity NPD6114 Approved
0.6512 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6512 Remote Similarity NPD6118 Approved
0.6512 Remote Similarity NPD6697 Approved
0.6512 Remote Similarity NPD6115 Approved
0.6509 Remote Similarity NPD5167 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data