Natural Product: NPC73765

Natural Product ID:  NPC73765
Common Name:   Uridine Triphosphate
IUPAC Name:   [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate
Synonyms:   Uridine triphosphate; Uridine-5'-triphosphate; UTP
Molecular Formula:   C9H15N2O15P3
Standard InCHIKey:  PGAVKCOVUIYSFO-XVFCMESISA-N
Standard InCHI:  InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
Canonical SMILES:  O[C@@H]1[C@@H](COP(=O)(OP(=O)(OP(=O)(O)O)O)O)O[C@H]([C@@H]1O)n1ccc(nc1=O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1797 Homo sapiens Species Hominidae Eukaryota saliva DOI[10.1007/s11306-015-0840-5]
NPO20338 Mus musculus Species Muridae Eukaryota PMID[19425150]
NPO730 Escherichia coli Species Enterobacteriaceae Bacteria PMID[21988831]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT3825 Individual Protein Purinergic receptor P2Y1 Homo sapiens EC50 > 100000 nM 12213051
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 140 nM 12213051
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 2500 nM 12213051
NPT3828 Individual Protein Pyrimidinergic receptor P2Y4 Rattus norvegicus EC50 = 2600 nM 12213051
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 = 6000 nM 12213051
NPT3829 Individual Protein Purinergic receptor P2Y11 Homo sapiens EC50 > 100000 nM 12213051
NPT3830 Individual Protein N-acetyllactosaminide alpha-1,3-galactosyltransferase Mus musculus Ki = 128000 nM 3475471
NPT2881 Individual Protein Beta-1,4-galactosyltransferase 1 Bos taurus Ki = 128000 nM 10.1016/S0960-894X(00)80055-4
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 30 nM 11206448
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 100 nM 11206448
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 > 10000 nM 11206448
NPT2672 Individual Protein Dihydroorotase Homo sapiens Activity = 18 % 10.1016/0960-894X(96)00452-0
NPT3832 Individual Protein Purinergic receptor P2Y2 Rattus norvegicus EC50 = 130 nM 16539385
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 450 nM 16539385
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 43 nM 17125260
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 87 nM 17125260
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 > 10000 nM 17302398
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 49 nM 17302398
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 73 nM 17302398
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 109.65 nM 17941622
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 7 nM 17011188
NPT3825 Individual Protein Purinergic receptor P2Y1 Homo sapiens EC50 > 2000 nM 17011188
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 39 nM 17011188
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 = 424 nM 17011188
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 7 nM 17079144
NPT3825 Individual Protein Purinergic receptor P2Y1 Homo sapiens EC50 > 2000 nM 17079144
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 39 nM 17079144
NPT2 Others Unspecified EC50 = 424 nM 17079144
NPT2 Others Unspecified Ki = 100000 nM 17329110
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 640 nM 18760862
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 480 nM 18760862
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 60 nM 18514530
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 90 nM 18514530
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 > 10000 nM 18514530
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 80.4 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 2090 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens Ratio EC50 = 25 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 37.2 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 59 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 124 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 50.1 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 138 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 20600 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 157 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 121 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 108 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 > 300000 nM 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens Ratio EC50 = 2 19419204
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 781 nM 19419204
NPT3833 Individual Protein Purinergic receptor P2Y2 Mus musculus IC50 = 1510 nM 19523835
NPT3833 Individual Protein Purinergic receptor P2Y2 Mus musculus EC50 = 1260 nM 19523835
NPT3833 Individual Protein Purinergic receptor P2Y2 Mus musculus Activity = 40 % 19523835
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 100 nM 20095577
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 500 nM 20095577
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 90 nM 20446735
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 60 nM 20446735
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens Activity <= 50 % 20446735
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 > 10000 nM 20446735
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 39810.7 nM PubChem BioAssay data set
NPT583 Individual Protein Inositol monophosphatase 1 Rattus norvegicus Potency = 28183.8 nM PubChem BioAssay data set
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 17.9 nM 21417463
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 88.4 nM 21417463
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 = 6000 nM 21417463
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 60 nM 21528910
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 90 nM 21528910
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 55 nM 21528910
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 80 nM 21528910
NPT1391 Individual Protein Pyrimidinergic receptor P2Y6 Homo sapiens EC50 > 10000 nM 21528910
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens Ratio EC50 = 5 21528910
NPT698 Individual Protein Regulator of G-protein signaling 4 Homo sapiens Potency 1683.4 nM PubChem BioAssay data set
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 640 nM 22107038
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 480 nM 22107038
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 20 nM 22386981
NPT3826 Individual Protein Purinergic receptor P2Y2 Homo sapiens EC50 = 140 nM 22901672
NPT3827 Individual Protein Pyrimidinergic receptor P2Y4 Homo sapiens EC50 = 900 nM 22901672
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency 2818.4 nM PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC73765 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC283698
0.9885 High Similarity NPC36985
0.9885 High Similarity NPC17892
0.9655 High Similarity NPC320249
0.9655 High Similarity NPC322594
0.954 High Similarity NPC324390
0.9121 High Similarity NPC317639
0.908 High Similarity NPC43246
0.908 High Similarity NPC89051
0.8969 High Similarity NPC329277
0.8788 High Similarity NPC149843
0.8788 High Similarity NPC155087
0.8736 High Similarity NPC106780
0.8602 High Similarity NPC324516
0.8602 High Similarity NPC318166
0.8587 High Similarity NPC327344
0.837 Intermediate Similarity NPC315063
0.8229 Intermediate Similarity NPC120887
0.8152 Intermediate Similarity NPC163352
0.8152 Intermediate Similarity NPC210456
0.8144 Intermediate Similarity NPC328779
0.8125 Intermediate Similarity NPC226769
0.8125 Intermediate Similarity NPC280946
0.8125 Intermediate Similarity NPC6166
0.798 Intermediate Similarity NPC328914
0.7857 Intermediate Similarity NPC90240
0.7835 Intermediate Similarity NPC329384
0.7826 Intermediate Similarity NPC71339
0.7826 Intermediate Similarity NPC112842
0.7742 Intermediate Similarity NPC325723
0.764 Intermediate Similarity NPC329077
0.7632 Intermediate Similarity NPC284651
0.7423 Intermediate Similarity NPC171116
0.7396 Intermediate Similarity NPC190334
0.7396 Intermediate Similarity NPC62927
0.7083 Intermediate Similarity NPC229249
0.6989 Remote Similarity NPC325902
0.6634 Remote Similarity NPC328806
0.6557 Remote Similarity NPC315058
0.6531 Remote Similarity NPC319753
0.64 Remote Similarity NPC313962
0.6383 Remote Similarity NPC315806
0.625 Remote Similarity NPC109188
0.6239 Remote Similarity NPC478024
0.6129 Remote Similarity NPC325750
0.6077 Remote Similarity NPC318142
0.5691 Remote Similarity NPC313813
0.56 Remote Similarity NPC470782

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC73765 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD9639 Clinical (unspecified phase)
0.908 High Similarity NPD9581 Clinical (unspecified phase)
0.908 High Similarity NPD9580 Clinical (unspecified phase)
0.8969 High Similarity NPD3129 Phase 3
0.8866 High Similarity NPD3128 Phase 3
0.8539 High Similarity NPD9557 Clinical (unspecified phase)
0.8208 Intermediate Similarity NPD3139 Phase 3
0.8113 Intermediate Similarity NPD3138 Phase 3
0.8105 Intermediate Similarity NPD1686 Approved
0.809 Intermediate Similarity NPD9556 Approved
0.8085 Intermediate Similarity NPD9565 Discontinued
0.8061 Intermediate Similarity NPD5789 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD9561 Approved
0.8 Intermediate Similarity NPD9560 Approved
0.798 Intermediate Similarity NPD1455 Phase 3
0.798 Intermediate Similarity NPD1454 Phase 3
0.7979 Intermediate Similarity NPD755 Phase 3
0.7912 Intermediate Similarity NPD9546 Phase 2
0.7889 Intermediate Similarity NPD9558 Phase 3
0.7826 Intermediate Similarity NPD280 Approved
0.7826 Intermediate Similarity NPD9533 Phase 2
0.7778 Intermediate Similarity NPD502 Approved
0.7766 Intermediate Similarity NPD241 Discontinued
0.766 Intermediate Similarity NPD9562 Discovery
0.766 Intermediate Similarity NPD240 Phase 3
0.766 Intermediate Similarity NPD170 Approved
0.7593 Intermediate Similarity NPD7914 Suspended
0.7527 Intermediate Similarity NPD9559 Phase 1
0.7527 Intermediate Similarity NPD9529 Phase 1
0.7475 Intermediate Similarity NPD501 Phase 1
0.7447 Intermediate Similarity NPD238 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD239 Phase 2
0.7429 Intermediate Similarity NPD6946 Approved
0.7423 Intermediate Similarity NPD841 Approved
0.7396 Intermediate Similarity NPD9604 Approved
0.7396 Intermediate Similarity NPD9603 Phase 3
0.7396 Intermediate Similarity NPD9602 Phase 3
0.7327 Intermediate Similarity NPD762 Discontinued
0.7273 Intermediate Similarity NPD251 Approved
0.7238 Intermediate Similarity NPD1061 Clinical (unspecified phase)
0.71 Intermediate Similarity NPD6943 Clinical (unspecified phase)
0.71 Intermediate Similarity NPD9585 Discontinued
0.7083 Intermediate Similarity NPD9601 Approved
0.7041 Intermediate Similarity NPD1760 Approved
0.6957 Remote Similarity NPD7756 Clinical (unspecified phase)
0.6952 Remote Similarity NPD223 Clinical (unspecified phase)
0.6881 Remote Similarity NPD1385 Discontinued
0.6827 Remote Similarity NPD514 Clinical (unspecified phase)
0.6822 Remote Similarity NPD7651 Approved
0.68 Remote Similarity NPD301 Discontinued
0.68 Remote Similarity NPD9553 Approved
0.68 Remote Similarity NPD9554 Approved
0.6797 Remote Similarity NPD7761 Suspended
0.6771 Remote Similarity NPD9600 Approved
0.6699 Remote Similarity NPD279 Clinical (unspecified phase)
0.6667 Remote Similarity NPD267 Discontinued
0.6633 Remote Similarity NPD9572 Clinical (unspecified phase)
0.6581 Remote Similarity NPD7992 Clinical (unspecified phase)
0.6542 Remote Similarity NPD192 Phase 2
0.6531 Remote Similarity NPD9573 Phase 2
0.6505 Remote Similarity NPD500 Discontinued
0.6476 Remote Similarity NPD215 Discontinued
0.6383 Remote Similarity NPD9653 Clinical (unspecified phase)
0.6337 Remote Similarity NPD9555 Phase 2
0.6327 Remote Similarity NPD9429 Discontinued
0.6292 Remote Similarity NPD9503 Approved
0.6292 Remote Similarity NPD9504 Approved
0.6262 Remote Similarity NPD6948 Phase 3
0.625 Remote Similarity NPD9407 Approved
0.625 Remote Similarity NPD2633 Phase 1
0.625 Remote Similarity NPD4743 Phase 2
0.625 Remote Similarity NPD1331 Approved
0.6224 Remote Similarity NPD9427 Approved
0.6207 Remote Similarity NPD1805 Phase 2
0.6207 Remote Similarity NPD1804 Phase 2
0.614 Remote Similarity NPD1428 Phase 2
0.6121 Remote Similarity NPD284 Phase 1
0.604 Remote Similarity NPD2691 Clinical (unspecified phase)
0.6034 Remote Similarity NPD6693 Phase 3
0.5946 Remote Similarity NPD3121 Phase 2
0.5938 Remote Similarity NPD9405 Approved
0.5922 Remote Similarity NPD205 Approved
0.5902 Remote Similarity NPD6935 Phase 3
0.5902 Remote Similarity NPD6936 Clinical (unspecified phase)
0.59 Remote Similarity NPD9403 Discontinued
0.5893 Remote Similarity NPD765 Discontinued
0.5833 Remote Similarity NPD285 Discontinued
0.5739 Remote Similarity NPD244 Clinical (unspecified phase)
0.5727 Remote Similarity NPD1706 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   6133
ChEMBL   CHEMBL336296
ZINC  

Physicochemical Properties

Molecular Weight:  483.97
ALogP:  -3.0419
MLogP:  0.25
XLogP:  -5.898
# Rotatable Bonds:  15
Polar Surface Area:  291.84
# H-Bond Aceptor:  17
# H-Bond Donor:  7
# Rings:  2
# Heavy Atoms:  29

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