Natural Product: NPC250488

Natural Product ID:  NPC250488
Common Name:   5-Hydroxy-2,2,8-Trimethyl-7-[(2S,3R,4S,5S,6R)-3,4,5-Trihydroxy-6-(Hydroxymethyl)Oxan-2-Yl]Oxychromene-6-Carbaldehyde
IUPAC Name:   5-hydroxy-2,2,8-trimethyl-7-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxychromene-6-carbaldehyde
Synonyms:  
Molecular Formula:   C19H24O9
Standard InCHIKey:  AGBSYAOZFIUAOO-YYZLIPTLSA-N
Standard InCHI:  InChI=1S/C19H24O9/c1-8-16(27-18-15(25)14(24)13(23)11(7-21)26-18)10(6-20)12(22)9-4-5-19(2,3)28-17(8)9/h4-6,11,13-15,18,21-25H,7H2,1-3H3/t11-,13-,14+,15-,18+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](Oc2c(C=O)c(O)c3c(c2C)OC(C=C3)(C)C)[C@@H]([C@H]([C@@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO20620 Eucalyptus cypellocarpa Species Myrtaceae Eukaryota PMID[11000030]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified Activity = 5 % 8759172
NPT2 Others Unspecified Activity = 31.8 % 8759172
NPT2 Others Unspecified Activity = 90 % 25490700
NPT32 Organism Mus musculus Mus musculus Activity = 30 % 17407813
NPT80 Cell Line Raji Homo sapiens Activity = 60 % 20055495
NPT2 Others Unspecified Activity = 68.9 % 20055495

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC250488 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9524 High Similarity NPC38775
0.9333 High Similarity NPC268950
0.9333 High Similarity NPC211158
0.9333 High Similarity NPC108706
0.9333 High Similarity NPC78021
0.9333 High Similarity NPC87304
0.9272 High Similarity NPC470604
0.9272 High Similarity NPC470603
0.9272 High Similarity NPC470605
0.9216 High Similarity NPC470607
0.915 High Similarity NPC470606
0.915 High Similarity NPC23817
0.9133 High Similarity NPC191154
0.9103 High Similarity NPC183672
0.9085 High Similarity NPC17521
0.9079 High Similarity NPC106625
0.9073 High Similarity NPC134819
0.9038 High Similarity NPC131745
0.9038 High Similarity NPC44947
0.902 High Similarity NPC95090
0.902 High Similarity NPC99233
0.902 High Similarity NPC27408
0.9013 High Similarity NPC121001
0.9013 High Similarity NPC259182
0.9007 High Similarity NPC106025
0.9007 High Similarity NPC214454
0.9007 High Similarity NPC477240
0.9 High Similarity NPC199335
0.8981 High Similarity NPC179198
0.8981 High Similarity NPC124155
0.8981 High Similarity NPC66087
0.8981 High Similarity NPC257566
0.8981 High Similarity NPC278419
0.8974 High Similarity NPC47923
0.8968 High Similarity NPC73511
0.8961 High Similarity NPC127406
0.8961 High Similarity NPC206378
0.8954 High Similarity NPC39360
0.8954 High Similarity NPC29763
0.8954 High Similarity NPC83283
0.8954 High Similarity NPC143851
0.8954 High Similarity NPC210003
0.8947 High Similarity NPC190217
0.8933 High Similarity NPC23084
0.8917 High Similarity NPC259834
0.8917 High Similarity NPC190450
0.891 High Similarity NPC472320
0.8903 High Similarity NPC161749
0.8903 High Similarity NPC197896
0.8903 High Similarity NPC43638
0.8903 High Similarity NPC258035
0.8903 High Similarity NPC65003
0.8903 High Similarity NPC473512
0.8903 High Similarity NPC122809
0.8903 High Similarity NPC108831
0.8903 High Similarity NPC129827
0.8903 High Similarity NPC156457
0.8903 High Similarity NPC60966
0.8903 High Similarity NPC6985
0.8903 High Similarity NPC44931
0.8903 High Similarity NPC313163
0.8903 High Similarity NPC182634
0.8896 High Similarity NPC72649
0.8896 High Similarity NPC97052
0.8896 High Similarity NPC39351
0.8896 High Similarity NPC169248
0.8896 High Similarity NPC26195
0.8889 High Similarity NPC259767
0.8889 High Similarity NPC88484
0.8882 High Similarity NPC213723
0.8874 High Similarity NPC10097
0.8874 High Similarity NPC472345
0.8859 High Similarity NPC112749
0.8859 High Similarity NPC18886
0.8854 High Similarity NPC303913
0.8846 High Similarity NPC111929
0.8846 High Similarity NPC41121
0.8846 High Similarity NPC473634
0.8846 High Similarity NPC138811
0.8846 High Similarity NPC320283
0.8846 High Similarity NPC472459
0.8846 High Similarity NPC22062
0.8839 High Similarity NPC45165
0.8839 High Similarity NPC307938
0.8839 High Similarity NPC170475
0.8839 High Similarity NPC265480
0.8839 High Similarity NPC203500
0.8839 High Similarity NPC149368
0.8839 High Similarity NPC323593
0.8824 High Similarity NPC23253
0.8816 High Similarity NPC307052
0.8816 High Similarity NPC139966
0.8808 High Similarity NPC218685
0.8808 High Similarity NPC85773
0.8797 High Similarity NPC150164
0.8797 High Similarity NPC93215
0.879 High Similarity NPC473623
0.879 High Similarity NPC246469
0.879 High Similarity NPC153342
0.879 High Similarity NPC200708
0.879 High Similarity NPC142860
0.879 High Similarity NPC187379
0.879 High Similarity NPC271270
0.879 High Similarity NPC97285
0.8782 High Similarity NPC135391
0.8782 High Similarity NPC78263
0.8782 High Similarity NPC77672
0.8782 High Similarity NPC197304
0.8782 High Similarity NPC133671
0.8782 High Similarity NPC54802
0.8766 High Similarity NPC256141
0.8766 High Similarity NPC56232
0.8766 High Similarity NPC150123
0.8766 High Similarity NPC10807
0.8766 High Similarity NPC161881
0.8766 High Similarity NPC244583
0.8758 High Similarity NPC5319
0.8742 High Similarity NPC474302
0.8742 High Similarity NPC121703
0.8734 High Similarity NPC173582
0.8734 High Similarity NPC181465
0.8734 High Similarity NPC139320
0.8734 High Similarity NPC159579
0.8734 High Similarity NPC259957
0.8734 High Similarity NPC476215
0.8734 High Similarity NPC215710
0.8734 High Similarity NPC224530
0.8734 High Similarity NPC163242
0.8734 High Similarity NPC216496
0.8734 High Similarity NPC116458
0.8734 High Similarity NPC246943
0.8734 High Similarity NPC129217
0.8734 High Similarity NPC101636
0.8734 High Similarity NPC85707
0.8734 High Similarity NPC265885
0.8734 High Similarity NPC276377
0.8734 High Similarity NPC473438
0.8734 High Similarity NPC48093
0.8734 High Similarity NPC253788
0.8734 High Similarity NPC249281
0.8733 High Similarity NPC471621
0.8726 High Similarity NPC308265
0.8726 High Similarity NPC43761
0.8718 High Similarity NPC261866
0.8718 High Similarity NPC295613
0.8718 High Similarity NPC473657
0.871 High Similarity NPC180301
0.871 High Similarity NPC223701
0.871 High Similarity NPC7989
0.871 High Similarity NPC472583
0.871 High Similarity NPC248793
0.8704 High Similarity NPC150767
0.8704 High Similarity NPC78734
0.8704 High Similarity NPC76047
0.8701 High Similarity NPC471676
0.8701 High Similarity NPC328740
0.8701 High Similarity NPC209846
0.8701 High Similarity NPC244577
0.8701 High Similarity NPC472422
0.8701 High Similarity NPC472420
0.8701 High Similarity NPC477897
0.8701 High Similarity NPC471677
0.8701 High Similarity NPC289774
0.8701 High Similarity NPC263384
0.8693 High Similarity NPC472628
0.8688 High Similarity NPC72016
0.8688 High Similarity NPC294722
0.8684 High Similarity NPC47388
0.8684 High Similarity NPC91902
0.8684 High Similarity NPC177995
0.8684 High Similarity NPC302989
0.8684 High Similarity NPC285748
0.8684 High Similarity NPC473133
0.8684 High Similarity NPC470670
0.8684 High Similarity NPC474108
0.8684 High Similarity NPC472627
0.8679 High Similarity NPC127782
0.8679 High Similarity NPC300537
0.8679 High Similarity NPC240306
0.8679 High Similarity NPC475382
0.8679 High Similarity NPC298171
0.8679 High Similarity NPC27942
0.8675 High Similarity NPC474044
0.8671 High Similarity NPC304741
0.8671 High Similarity NPC271479
0.8671 High Similarity NPC136761
0.8671 High Similarity NPC470405
0.8671 High Similarity NPC471079
0.8667 High Similarity NPC276565
0.8662 High Similarity NPC288084
0.8654 High Similarity NPC207809
0.8654 High Similarity NPC92395
0.8654 High Similarity NPC304207
0.8654 High Similarity NPC111341
0.8654 High Similarity NPC48579
0.8654 High Similarity NPC217706
0.8654 High Similarity NPC470681
0.8654 High Similarity NPC87404
0.8654 High Similarity NPC259710
0.8654 High Similarity NPC304745

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC250488 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8903 High Similarity NPD4381 Clinical (unspecified phase)
0.8758 High Similarity NPD7804 Clinical (unspecified phase)
0.8516 High Similarity NPD4380 Phase 2
0.8485 Intermediate Similarity NPD6559 Discontinued
0.8415 Intermediate Similarity NPD7054 Approved
0.8408 Intermediate Similarity NPD6801 Discontinued
0.8364 Intermediate Similarity NPD7074 Phase 3
0.8364 Intermediate Similarity NPD7472 Approved
0.8354 Intermediate Similarity NPD3818 Discontinued
0.8313 Intermediate Similarity NPD7075 Discontinued
0.8313 Intermediate Similarity NPD6797 Phase 2
0.8263 Intermediate Similarity NPD7251 Discontinued
0.8239 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8214 Intermediate Similarity NPD7808 Phase 3
0.8194 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8194 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8125 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8107 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8092 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8092 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8063 Intermediate Similarity NPD1934 Approved
0.8039 Intermediate Similarity NPD1549 Phase 2
0.8 Intermediate Similarity NPD7411 Suspended
0.7963 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7904 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7904 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7904 Intermediate Similarity NPD6166 Phase 2
0.7871 Intermediate Similarity NPD2800 Approved
0.7829 Intermediate Similarity NPD6651 Approved
0.7792 Intermediate Similarity NPD2796 Approved
0.7791 Intermediate Similarity NPD7819 Suspended
0.7791 Intermediate Similarity NPD2801 Approved
0.7785 Intermediate Similarity NPD6799 Approved
0.7763 Intermediate Similarity NPD5124 Phase 1
0.7763 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD5403 Approved
0.7744 Intermediate Similarity NPD3817 Phase 2
0.7736 Intermediate Similarity NPD2533 Approved
0.7736 Intermediate Similarity NPD2532 Approved
0.7736 Intermediate Similarity NPD2534 Approved
0.7727 Intermediate Similarity NPD1510 Phase 2
0.7725 Intermediate Similarity NPD6959 Discontinued
0.7697 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7676 Intermediate Similarity NPD7584 Approved
0.7673 Intermediate Similarity NPD1511 Approved
0.764 Intermediate Similarity NPD920 Approved
0.764 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD5401 Approved
0.7607 Intermediate Similarity NPD6599 Discontinued
0.7595 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7593 Intermediate Similarity NPD1653 Approved
0.7588 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD1240 Approved
0.7578 Intermediate Similarity NPD1512 Approved
0.7564 Intermediate Similarity NPD1551 Phase 2
0.753 Intermediate Similarity NPD5402 Approved
0.7485 Intermediate Similarity NPD3882 Suspended
0.7485 Intermediate Similarity NPD7768 Phase 2
0.7484 Intermediate Similarity NPD1607 Approved
0.7471 Intermediate Similarity NPD6232 Discontinued
0.747 Intermediate Similarity NPD8455 Phase 2
0.7468 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7457 Intermediate Similarity NPD5844 Phase 1
0.7456 Intermediate Similarity NPD5494 Approved
0.7443 Intermediate Similarity NPD8313 Approved
0.7443 Intermediate Similarity NPD8312 Approved
0.7432 Intermediate Similarity NPD1091 Approved
0.7421 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7375 Intermediate Similarity NPD4628 Phase 3
0.7354 Intermediate Similarity NPD7585 Approved
0.7351 Intermediate Similarity NPD6779 Approved
0.7351 Intermediate Similarity NPD6777 Approved
0.7351 Intermediate Similarity NPD6778 Approved
0.7351 Intermediate Similarity NPD6782 Approved
0.7351 Intermediate Similarity NPD6776 Approved
0.7351 Intermediate Similarity NPD6781 Approved
0.7351 Intermediate Similarity NPD6780 Approved
0.7341 Intermediate Similarity NPD7473 Discontinued
0.7338 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7302 Intermediate Similarity NPD7583 Approved
0.7294 Intermediate Similarity NPD919 Approved
0.7283 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD7033 Discontinued
0.7273 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD3750 Approved
0.7267 Intermediate Similarity NPD5710 Approved
0.7267 Intermediate Similarity NPD5711 Approved
0.7257 Intermediate Similarity NPD7286 Phase 2
0.724 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.724 Intermediate Similarity NPD7783 Phase 2
0.7235 Intermediate Similarity NPD3749 Approved
0.7234 Intermediate Similarity NPD7435 Discontinued
0.7233 Intermediate Similarity NPD2935 Discontinued
0.7232 Intermediate Similarity NPD7685 Pre-registration
0.7209 Intermediate Similarity NPD7199 Phase 2
0.7209 Intermediate Similarity NPD1247 Approved
0.7205 Intermediate Similarity NPD1243 Approved
0.7205 Intermediate Similarity NPD1652 Phase 2
0.72 Intermediate Similarity NPD3751 Discontinued
0.7197 Intermediate Similarity NPD1933 Approved
0.7191 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7175 Intermediate Similarity NPD5953 Discontinued
0.7174 Intermediate Similarity NPD6535 Approved
0.7174 Intermediate Similarity NPD6534 Approved
0.7168 Intermediate Similarity NPD3787 Discontinued
0.716 Intermediate Similarity NPD1465 Phase 2
0.7143 Intermediate Similarity NPD7698 Approved
0.7143 Intermediate Similarity NPD7696 Phase 3
0.7143 Intermediate Similarity NPD7697 Approved
0.7135 Intermediate Similarity NPD8151 Discontinued
0.7115 Intermediate Similarity NPD2313 Discontinued
0.7108 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7105 Intermediate Similarity NPD7870 Phase 2
0.7105 Intermediate Similarity NPD7871 Phase 2
0.7102 Intermediate Similarity NPD7228 Approved
0.7101 Intermediate Similarity NPD37 Approved
0.7093 Intermediate Similarity NPD6234 Discontinued
0.709 Intermediate Similarity NPD6823 Phase 2
0.7083 Intermediate Similarity NPD7701 Phase 2
0.7081 Intermediate Similarity NPD4363 Phase 3
0.7081 Intermediate Similarity NPD4360 Phase 2
0.7076 Intermediate Similarity NPD4967 Phase 2
0.7076 Intermediate Similarity NPD4966 Approved
0.7076 Intermediate Similarity NPD4965 Approved
0.7059 Intermediate Similarity NPD7700 Phase 2
0.7059 Intermediate Similarity NPD7699 Phase 2
0.7055 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7039 Intermediate Similarity NPD9717 Approved
0.7037 Intermediate Similarity NPD2424 Discontinued
0.7033 Intermediate Similarity NPD8434 Phase 2
0.7029 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7025 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7025 Intermediate Similarity NPD1613 Approved
0.7024 Intermediate Similarity NPD7458 Discontinued
0.7013 Intermediate Similarity NPD1203 Approved
0.701 Intermediate Similarity NPD7874 Approved
0.701 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.6994 Remote Similarity NPD6674 Discontinued
0.6987 Remote Similarity NPD6832 Phase 2
0.6981 Remote Similarity NPD230 Phase 1
0.6974 Remote Similarity NPD422 Phase 1
0.6974 Remote Similarity NPD7801 Approved
0.6957 Remote Similarity NPD2799 Discontinued
0.6957 Remote Similarity NPD3748 Approved
0.6957 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6928 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6923 Remote Similarity NPD3226 Approved
0.6914 Remote Similarity NPD6100 Approved
0.6914 Remote Similarity NPD6099 Approved
0.6899 Remote Similarity NPD6798 Discontinued
0.6894 Remote Similarity NPD7097 Phase 1
0.6885 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6879 Remote Similarity NPD4908 Phase 1
0.6875 Remote Similarity NPD447 Suspended
0.6871 Remote Similarity NPD2346 Discontinued
0.6869 Remote Similarity NPD7930 Approved
0.6863 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6859 Remote Similarity NPD2798 Approved
0.6845 Remote Similarity NPD6212 Phase 3
0.6845 Remote Similarity NPD6213 Phase 3
0.6845 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6839 Remote Similarity NPD8320 Phase 1
0.6839 Remote Similarity NPD8319 Approved
0.6821 Remote Similarity NPD9545 Approved
0.6821 Remote Similarity NPD1548 Phase 1
0.6807 Remote Similarity NPD6190 Approved
0.68 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6795 Remote Similarity NPD2797 Approved
0.6792 Remote Similarity NPD3268 Approved
0.6786 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6772 Remote Similarity NPD4361 Phase 2
0.6772 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6772 Remote Similarity NPD4362 Clinical (unspecified phase)
0.6768 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6768 Remote Similarity NPD6005 Phase 3
0.6768 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6768 Remote Similarity NPD6002 Phase 3
0.6768 Remote Similarity NPD6004 Phase 3
0.6768 Remote Similarity NPD7266 Discontinued
0.6768 Remote Similarity NPD2344 Approved
0.6766 Remote Similarity NPD5058 Phase 3
0.6763 Remote Similarity NPD5761 Phase 2
0.6763 Remote Similarity NPD5760 Phase 2
0.6758 Remote Similarity NPD7240 Approved
0.6757 Remote Similarity NPD8150 Discontinued
0.6753 Remote Similarity NPD1610 Phase 2
0.6752 Remote Similarity NPD1019 Discontinued
0.675 Remote Similarity NPD6233 Phase 2
0.6748 Remote Similarity NPD4308 Phase 3
0.6742 Remote Similarity NPD3926 Phase 2
0.674 Remote Similarity NPD1729 Discontinued
0.6731 Remote Similarity NPD3225 Approved
0.673 Remote Similarity NPD3027 Phase 3
0.6726 Remote Similarity NPD7390 Discontinued
0.6725 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6719 Remote Similarity NPD7501 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   503736
ChEMBL   CHEMBL519220
ZINC  

Physicochemical Properties

Molecular Weight:  396.14
ALogP:  -1.3101
MLogP:  2.56
XLogP:  0.391
# Rotatable Bonds:  12
Polar Surface Area:  145.91
# H-Bond Aceptor:  6
# H-Bond Donor:  5
# Rings:  3
# Heavy Atoms:  28

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs